Pairwise fitting emdb-1157 on pdb-5ipr by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-5ipr by gmfit(PID:3546899).





RANK[1] Corr.Coeff:0.631

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-5ipr)

display:



color:


b'CRYO-EM STRUCTURE OF GLUN1/GLUN2B NMDA RECEPTOR IN THE DCKA/D-APV-    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.631
0.500
0.489
0.456
0.449
0.444
0.444
0.433
0.399
0.300







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ipr"(PDB-format) or 
 "5ipr"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.669303,0.556305,0.492502 53.394531 center 0,0,0 model #1
move -1.232024,4.430310,-42.520643 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!