Pairwise fitting emdb-1157 on pdb-5gam by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-5gam by gmfit(PID:4068718).





RANK[1] Corr.Coeff:0.645

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-5gam)

display:



color:


b'FOOT REGION OF THE YEAST SPLICEOSOMAL U4/U6.U5 TRI-SNRNP              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.645
0.599
0.584
0.578
0.569
0.563
0.541
0.529
0.366
0.357







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gam"(PDB-format) or 
 "5gam"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.298529,0.349694,0.888028 152.733657 center 0,0,0 model #1
move 239.255596,263.819864,108.777531 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!