Pairwise fitting emdb-1090 on pdb-5mmj by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-5mmj by gmfit(PID:3789892).





RANK[1] Corr.Coeff:0.665

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-5mmj)

display:



color:


b'STRUCTURE OF THE SMALL SUBUNIT OF THE CHLOROPLAST RIBOSOME            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.665
0.588
0.572
0.531
0.516
0.499
0.496
0.490
0.410
0.403







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mmj"(PDB-format) or 
 "5mmj"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.758723,-0.305546,0.575309 132.444095 center 0,0,0 model #1
move 217.328195,213.972571,227.255267 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!