Pairwise fitting emdb-1090 on pdb-5arh by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-5arh by gmfit(PID:1682843).

RANK[1] Corr.Coeff:0.543 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-5arh)
display:
color:
b'BOVINE MITOCHONDRIAL ATP SYNTHASE STATE 2A ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.543 0.519 0.517 0.493 0.480 0.454 0.432 0.430 0.332 0.327

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5arh"(PDB-format) or "5arh"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.459049,-0.365181,0.809887 159.285493 center 0,0,0 model #1
    move 201.506765,272.273612,225.342939 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!