Pairwise fitting emdb-1090 on pdb-4a7l by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-4a7l by gmfit(PID:3193963).





RANK[1] Corr.Coeff:0.609

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-4a7l)

display:



color:


b'STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR ATM 1)       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.609
0.561
0.534
0.503
0.499
0.496
0.492
0.489
0.340
0.336







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a7l"(PDB-format) or 
 "4a7l"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.972871,0.037763,0.228247 89.566439 center 0,0,0 model #1
move 223.356232,159.465208,221.253671 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!