Pairwise fitting emdb-1090 on pdb-3j80 by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-3j80 by gmfit(PID:4000536).





RANK[1] Corr.Coeff:0.673

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-3j80)

display:



color:


b'CRYOEM STRUCTURE OF 40S-EIF1-EIF1A PREINITIATION COMPLEX              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.673
0.576
0.517
0.516
0.515
0.508
0.505
0.477
0.384
0.373







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j80"(PDB-format) or 
 "3j80"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.162115,-0.751139,0.639928 28.647359 center 0,0,0 model #1
move 253.589535,183.604802,192.722190 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!