Pairwise fitting emdb-1090 on pdb-3j6v by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-3j6v by gmfit(PID:1295399).

RANK[1] Corr.Coeff:0.543 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-3j6v)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.543 0.525 0.525 0.475 0.472 0.466 0.463 0.449 0.430 0.392

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j6v"(PDB-format) or "3j6v"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.456146,-0.262786,0.850220 162.979679 center 0,0,0 model #1
    move -76.107702,74.566771,61.783707 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!