Pairwise fitting emdb-1090 on emdb-6563 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-6563 by gmfit(PID:3121138).





RANK[1] Corr.Coeff:0.568

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-6563)

display:



color:


The cryo-EM structure of yeast spliceosomal U4/U6.U5 tri-snRNP (improved map for U4/U6 RNA region at 3.57 A) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.568
0.547
0.543
0.520
0.517
0.504
0.453
0.424
0.380
0.373







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6563.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.900463,0.282122,-0.331018 101.851364 center 0,0,0 model #1
move 248.098511,239.229829,200.128929 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!