Pairwise fitting emdb-1090 on emdb-4078 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-4078 by gmfit(PID:14466).





RANK[1] Corr.Coeff:0.720

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-4078)

display:



color:


Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.720
0.596
0.587
0.544
0.537
0.525
0.521
0.518
0.401
0.377







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4078.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.634391,0.695919,0.336519 156.176347 center 0,0,0 model #1
move 193.577809,122.670817,152.089615 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 4078)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(14466)]