Pairwise fitting emdb-1090 on emdb-2685 by gmfit



Pairwise fitting of target emdb-1090 on reference emdb-2685 by gmfit(PID:1361221).

RANK[1] Corr.Coeff:0.490 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(emdb-2685)
display:
color:
Density map of GluK2 desensitized state in complex with 2S,4R-4-methylglutamate [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.490 0.477 0.465 0.437 0.420 0.388 0.385 0.373 0.311 0.308

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2685.map.gz", and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.885441,-0.382792,0.263562 89.330598 center 0,0,0 model #1
    move 336.069382,294.134735,307.503576 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!