Pairwise fitting emdb-1090 on emdb-2604 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-2604 by gmfit(PID:43423).





RANK[1] Corr.Coeff:0.691

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-2604)

display:



color:


Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES in a rotated stated with masked 40S [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.691
0.606
0.603
0.579
0.553
0.530
0.512
0.512
0.409
0.384







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2604.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.284543,-0.656118,-0.698959 25.464547 center 0,0,0 model #1
move 208.152002,213.904132,210.764147 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!