Pairwise fitting emdb-1022 on pdb-5sy1 by gmfit










Pairwise fitting of target emdb-1022 on reference pdb-5sy1 by gmfit(PID:4139274).





RANK[1] Corr.Coeff:0.717

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1022)

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Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1022)]







REFERENCE(pdb-5sy1)

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b'STRUCTURE OF THE STRA6 RECEPTOR FOR RETINOL UPTAKE IN COMPLEX WITH    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.717
0.694
0.686
0.673
0.673
0.671
0.667
0.664
0.385
0.383







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5sy1"(PDB-format) or 
 "5sy1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1022.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.329775,0.643509,-0.690756 142.166078 center 0,0,0 model #1
move 112.111966,211.605361,241.069935 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!