Pairwise fitting emdb-1022 on pdb-3j08 by gmfit



Pairwise fitting of target emdb-1022 on reference pdb-3j08 by gmfit(PID:1113938).

RANK[1] Corr.Coeff:0.617 [JSmol] [Molmil]
TARGET(emdb-1022)
display:
color:
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1022)]
REFERENCE(pdb-3j08)
display:
color:
b'HIGH RESOLUTION HELICAL RECONSTRUCTION OF THE BACTERIAL P-TYPE ATPASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.617 0.571 0.569 0.567 0.562 0.560 0.559 0.548 0.544 0.376

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j08"(PDB-format) or "3j08"(mmCIF-format), and read it.
  2. Download the Target map "emd_1022.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.658703,0.228718,0.716797 179.450436 center 0,0,0 model #1
    move -38.917842,75.619408,-65.220716 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!