[English] 日本語
Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

-
Search query

Name, Taxonomy-ID, or Keywords:

-
Taxonomy info

Name *1Aeromonas jandaei
Other names *1synonym: genospecies DNA group 9 A. sobria / includes: Aeromonas sp. 'CDC 787-80' / Aeromonas sp. CECT 4228 / others: Aeromonas jandaei Carnahan et al. 1992 emend. Esteve et al. 2003 / ATCC 49568 ...Aeromonas jandaei Carnahan et al. 1992 emend. Esteve et al. 2003 / ATCC 49568 / CCUG 29543 / CCUG 30353 / CDC 0787-80 / CDC 787-80 / CECT 4228 / CIP 104171 / DSM 7311 / JCM 8316 / LMG 12221 / LMG:12221
NCBI Taxonomy ID650
Lineage *1cellular organisms > Bacteria > Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas
WikipediaWikipedia - Aeromonas jandaei:

Aeromonas jandaei is a Gram-negative bacterium of the genus Aeromonas isolated from human feces in Oregon.

...
Commentbacteria
References*1: NCBI Taxonomy

-
EMDB entries

No item found

-
PDB entries (2)

Showing all 2 items

PDB-3wgb:
Crystal structure of aeromonas jandaei L-allo-threonine aldolase

PDB-3wgc:
Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant

-
SASBDB entries

No item found

+
About Yorodumi Species

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Mar 5, 2020. Novel coronavirus structure data

Read more