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    [English] 日本語
    Yorodumi Species
    - Taxonomy data in EMDB/PDB/SASBDB -

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    Search query

    Name, Taxonomy-ID, or Keywords:

    e.g. E. coli, ebola, influenza, cow, crab-eating macaque, spinach, peanut, cobra, pyrococcus

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    Result of keyword search

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    Taxonomy info

    NameEscherichia coli
    Image *1Image

    Escherichia coli, "Bacillus coli" Migula 1895, "Bacterium coli commune" Escherich 1885, Bacillus coli, Bacterium coli, Bacterium coli (Migula 1895) Lehmann and Neumann 1896, Bacterium coli commune, Escherichia coli (Migula 1895) Castellani and Chalmers 1919

    Other names *2scientific name: Escherichia coli / common name: E. coli / synonym: Bacillus coli, Bacterium coli, Bacterium coli commune, Enterococcus coli / equivalent name: Escherichia/Shigella coli
    Lineage *2cellular organisms > Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia
    Yorodumi annotationbacteria
    References*1: Taxonomy icon (c) Database Center for Life Science licensed under CC Attribution2.1 Japan
    *2: NCBI Taxonomy
    LinksNCBI taxonomy ID: 562

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    EMDB entries

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    PDB entries

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    SASBDB entries

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    About Yorodumi Species

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    News

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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    Aug 31, 2016. New EM Navigator & Yorodumi

    New EM Navigator & Yorodumi

    • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
    • Current version will continue as 'legacy version' for some time.

    Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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    Apr 13, 2016. Omokage search got faster

    Omokage search got faster

    • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
    • Enjoy "shape similarity" of biomolecules, more!

    Related info.: Omokage search

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    Mar 3, 2016. Presentation (PDF format) at IPR seminar on Feb 19.

    Read more

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    Yorodumi Speices

    Taxonomy data in EMDB/PDB/SASBDB

    • Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

    Related info.: EMDB / PDB / SASBDB / Comparison of 3 databanks

    Read more