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e.g. E. coli, ebola, influenza, cow, crab-eating macaque, spinach, peanut, cobra, pyrococcus

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Taxonomy info

NameEscherichia coli
Image *1Image

Escherichia coli, "Bacillus coli" Migula 1895, "Bacterium coli commune" Escherich 1885, Bacillus coli, Bacterium coli, Bacterium coli (Migula 1895) Lehmann and Neumann 1896, Bacterium coli commune, Escherichia coli (Migula 1895) Castellani and Chalmers 1919

Synonym *2Escherichia/Shigella coli (equivalent name), bacterium 10a (includes), Escherchia coli (misspelling), Eschericia coli (misspelling), Bacillus coli (synonym), Bacterium coli (synonym), Bacterium coli commune (synonym), Enterococcus coli (synonym), bacterium E3 (synonym)
Lineage *2cellular organisms > Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia
Yorodumi annotationbacteria
References*1: Taxonomy icon (c) Database Center for Life Science licensed under CC Attribution2.1 Japan
*2: DDBJ - TXSearch
LinksDDBJ TXSearch
NCBI taxonomy ID: 562

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EMDB entries

Showing 1 - 50 of 429 items

1003

EMDB-1003
Solution structure of the E. coli 70S ribosome at 11.5 A resolution.

1004

EMDB-1004
Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex.

1005

EMDB-1005
Structure of the Escherichia coli ribosomal termination complex with release factor 2.

1006

EMDB-1006
A cryo-electron microscopic study of ribosome-bound termination factor RF2.

1007

EMDB-1007
A cryo-electron microscopic study of ribosome-bound termination factor RF2.

1008

EMDB-1008
A cryo-electron microscopic study of ribosome-bound termination factor RF2.

1009

EMDB-1009
A cryo-electron microscopic study of ribosome-bound termination factor RF2.

1010

EMDB-1010
A cryo-electron microscopic study of ribosome-bound termination factor RF2.

1017

EMDB-1017
The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

1019

EMDB-1019
The Escherichia coli large ribosomal subunit at 7.5 A resolution.

1022

EMDB-1022
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC.

1023

EMDB-1023
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC.

1042

EMDB-1042
ATP-bound states of GroEL captured by cryo-electron microscopy.

1045

EMDB-1045
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

1046

EMDB-1046
ATP-bound states of GroEL captured by cryo-electron microscopy.

1047

EMDB-1047
ATP-bound states of GroEL captured by cryo-electron microscopy.

1055

EMDB-1055
Locking and unlocking of ribosomal motions.

1056

EMDB-1056
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy.

1064

EMDB-1064
Visualization of release factor 3 on the ribosome during termination of protein synthesis.

1065

EMDB-1065
Visualization of release factor 3 on the ribosome during termination of protein synthesis.

1068

EMDB-1068
Three-dimensional structures of translating ribosomes by Cryo-EM.

1070

EMDB-1070
Three-dimensional structures of translating ribosomes by Cryo-EM.

1071

EMDB-1071
Three-dimensional structures of translating ribosomes by Cryo-EM.

1072

EMDB-1072
Three-dimensional structures of translating ribosomes by Cryo-EM.

1073

EMDB-1073
Three-dimensional structures of translating ribosomes by Cryo-EM.

1077

EMDB-1077
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.

1080

EMDB-1080
A 11.5 A single particle reconstruction of GroEL using EMAN.

1081

EMDB-1081
Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy.

1087

EMDB-1087
Three-dimensional structure of the bacterial multidrug transporter EmrE shows it is an asymmetric homodimer.

1095

EMDB-1095
A mutant chaperonin with rearranged inter-ring electrostatic contacts and temperature-sensitive dissociation.

1109

EMDB-1109
Structural insights into the activity of enhancer-binding proteins.

1110

EMDB-1110
Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation.

1127

EMDB-1127
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.

1128

EMDB-1128
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.

1143

EMDB-1143
Structure of the E. coli protein-conducting channel bound to a translating ribosome.

1151

EMDB-1151
Electron cryotomography of the E. coli pyruvate and 2-oxoglutarate dehydrogenase complexes.

1152

EMDB-1152
Electron cryotomography of the E. coli pyruvate and 2-oxoglutarate dehydrogenase complexes.

1173

EMDB-1173
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

1180

EMDB-1180
Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes.

1181

EMDB-1181
Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes.

1184

EMDB-1184
Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM.

1185

EMDB-1185
Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM.

1200

EMDB-1200
Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

1202

EMDB-1202
An expanded protein folding cage in the GroEL-gp31 complex.

1203

EMDB-1203
An expanded protein folding cage in the GroEL-gp31 complex.

1248

EMDB-1248
The cryo-EM structure of a translation initiation complex from Escherichia coli.

1249

EMDB-1249
The cryo-EM structure of a translation initiation complex from Escherichia coli.

1250

EMDB-1250
Structure of the E. coli signal recognition particle bound to a translating ribosome.

1251

EMDB-1251
Structure of the E. coli signal recognition particle bound to a translating ribosome.

1261

EMDB-1261
Following the signal sequence from ribosomal tunnel exit to signal recognition particle.

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PDB entries

Showing 1 - 50 of 7127 items

148l

PDB-148l
A COVALENT ENZYME-SUBSTRATE INTERMEDIATE WITH SACCHARIDE DISTORTION IN A MUTANT T4 LYSOZYME

1a04

PDB-1a04
THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM

1a0b

PDB-1a0b
HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

1a0o

PDB-1a0o
CHEY-BINDING DOMAIN OF CHEA IN COMPLEX WITH CHEY

1a0p

PDB-1a0p
SITE-SPECIFIC RECOMBINASE, XERD

1a16

PDB-1a16
AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU

1a23

PDB-1a23
SOLUTION NMR STRUCTURE OF REDUCED DSBA FROM ESCHERICHIA COLI, MINIMIZED AVERAGE STRUCTURE

1a24

PDB-1a24
SOLUTION NMR STRUCTURE OF REDUCED DSBA FROM ESCHERICHIA COLI, FAMILY OF 20 STRUCTURES

1a2j

PDB-1a2j
OXIDIZED DSBA CRYSTAL FORM II

1a2l

PDB-1a2l
REDUCED DSBA AT 2.7 ANGSTROMS RESOLUTION

1a2m

PDB-1a2m
OXIDIZED DSBA AT 2.7 ANGSTROMS RESOLUTION, CRYSTAL FORM III

1a2n

PDB-1a2n
STRUCTURE OF THE C115A MUTANT OF MURA COMPLEXED WITH THE FLUORINATED ANALOG OF THE REACTION TETRAHEDRAL INTERMEDIATE

1a3a

PDB-1a3a
CRYSTAL STRUCTURE OF IIA MANNITOL FROM ESCHERICHIA COLI

1a3g

PDB-1a3g
BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM ESCHERICHIA COLI

1a40

PDB-1a40
PHOSPHATE-BINDING PROTEIN WITH ALA 197 REPLACED WITH TRP

1a4d

PDB-1a4d
LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE

1a51

PDB-1a51
LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES

1a54

PDB-1a54
PHOSPHATE-BINDING PROTEIN MUTANT A197C LABELLED WITH A COUMARIN FLUOROPHORE AND BOUND TO DIHYDROGENPHOSPHATE ION

1a55

PDB-1a55
PHOSPHATE-BINDING PROTEIN MUTANT A197C

1a69

PDB-1a69
PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH FORMYCIN B AND SULPHATE (PHOSPHATE)

1a6i

PDB-1a6i
TET REPRESSOR, CLASS D VARIANT

1a6j

PDB-1a6j
NITROGEN REGULATORY BACTERIAL PROTEIN IIA-NITROGEN

1a82

PDB-1a82
DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID

1a8r

PDB-1a8r
GTP CYCLOHYDROLASE I (H112S MUTANT) IN COMPLEX WITH GTP

1a8v

PDB-1a8v
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR

1a91

PDB-1a91
SUBUNIT C OF THE F1FO ATP SYNTHASE OF ESCHERICHIA COLI; NMR, 10 STRUCTURES

1a95

PDB-1a95
XPRTASE FROM E. COLI COMPLEXED WITH MG:CPRPP AND GUANINE

1a96

PDB-1a96
XPRTASE FROM E. COLI WITH BOUND CPRPP AND XANTHINE

1a97

PDB-1a97
XPRTASE FROM E. COLI COMPLEXED WITH GMP

1a98

PDB-1a98
XPRTASE FROM E. COLI COMPLEXED WITH GMP

1a99

PDB-1a99
PUTRESCINE RECEPTOR (POTF) FROM E. COLI

1a9c

PDB-1a9c
GTP CYCLOHYDROLASE I (C110S MUTANT) IN COMPLEX WITH GTP

1a9x

PDB-1a9x
CARBAMOYL PHOSPHATE SYNTHETASE: CAUGHT IN THE ACT OF GLUTAMINE HYDROLYSIS

1a9y

PDB-1a9y
UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GLUCOSE

1a9z

PDB-1a9z
UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GALACTOSE

1aa3

PDB-1aa3
C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE

1aa6

PDB-1aa6
REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI

1aam

PDB-1aam
THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI

1aaw

PDB-1aaw
THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI

1ab4

PDB-1ab4
59KDA FRAGMENT OF GYRASE A FROM E. COLI

1ab5

PDB-1ab5
STRUCTURE OF CHEY MUTANT F14N, V21T

1ab6

PDB-1ab6
STRUCTURE OF CHEY MUTANT F14N, V86T

1abe

PDB-1abe
NOVEL STEREOSPECIFICITY OF THE L-ARABINOSE-BINDING PROTEIN

1abf

PDB-1abf
SUBSTRATE SPECIFICITY AND AFFINITY OF A PROTEIN MODULATED BY BOUND WATER MOLECULES

1abv

PDB-1abv
N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE

1ac1

PDB-1ac1
DSBA MUTANT H32L

1acp

PDB-1acp
REFINEMENT OF THE NMR STRUCTURES FOR ACYL CARRIER PROTEIN WITH SCALAR COUPLING DATA

1acv

PDB-1acv
DSBA MUTANT H32S

1ade

PDB-1ade
STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE PH 7 AT 25 DEGREES CELSIUS

1adi

PDB-1adi
STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS

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