[English] 日本語
Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

+
Search query

Name, Taxonomy-ID, or Keywords:

-
Result of keyword search

Showing all 4 items for (keywords: Drosophila melanogaster)

NameEMDBPDBSASBDB
Drosophila melanogaster American nodavirus (ANV) SW-2009a010
Wolbachia endosymbiont of Drosophila melanogaster (bacteria)060
Drosophila melanogaster Nora virus110
Drosophila melanogaster (fruit fly)21612810

-
Taxonomy info

NameDrosophila melanogaster
Name *1Drosophila melanogaster
Image *2

fruit fly, Drosophila melanogaster

Other names *1GenBank common name: fruit fly / synonym: Sophophora melanogaster / includes: Diptera sp. DNAS-2A9-224646 / others: Drosophila melanogaster Meigen, 1830 / Sophophora melanogaster (Meigen, 1830)
Names in strucutre dataFruit fly
NCBI Taxonomy ID7227
Lineage *1cellular organisms > Eukaryota > Opisthokonta > Metazoa > Eumetazoa > Bilateria > Protostomia > Ecdysozoa > Panarthropoda > Arthropoda > Mandibulata > Pancrustacea > Hexapoda > Insecta > Dicondylia > Pterygota > Neoptera > Endopterygota > Diptera > Brachycera > Muscomorpha > Eremoneura > Cyclorrhapha > Schizophora > Acalyptratae > Ephydroidea > Drosophilidae > Drosophilinae > Drosophilini > Drosophila > Sophophora > melanogaster group > melanogaster subgroup
WikipediaWikipedia - Drosophila melanogaster:

Drosophila melanogaster is a species of fly (an insect of the order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly", "pomace fly", or "banana fly"...

Commentarthropod
References*1: NCBI Taxonomy
*2: Taxonomy icon (c) Database Center for Life Science licensed under CC Attribution2.1 Japan

+
About Yorodumi Species

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Mar 5, 2020. Novel coronavirus structure data

Read more