3D Electron Microscopy (3D-EM) Data Navigator [English / 日本語]
Top Gallery List Diagram Statistics Viewer Documents
PDBj>EM Navigator>Similar structures page beta
Subject
PDB-3dg4
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex
Map
#1
PDB-3dg2
Score: : 0.9115
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complex
View 3D fitting by gmfit, structures similar to this
#2
PDB-3dg5
Score: : 0.9053
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complex
View 3D fitting by gmfit, structures similar to this
#3
PDB-3dg0
Score: : 0.901
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complex
View 3D fitting by gmfit, structures similar to this
#4
EMDB-2705
Score: : 0.8732
A structural model of the active ribosome-bound membrane protein insertase YidC
View 3D fitting by gmfit, structures similar to this
#5
EMDB-2773
Score: : 0.8729
Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
View 3D fitting by gmfit, structures similar to this
#6
PDB-3j6b
Score: : 0.8659
Structure of the yeast mitochondrial large ribosomal subunit
View 3D fitting by gmfit, structures similar to this
#7
EMDB-5799
Score: : 0.8572
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State
View 3D fitting by gmfit, structures similar to this
#8
PDB-2rdo
Score: : 0.8539
50S subunit with EF-G(GDPNP) and RRF bound
View 3D fitting by gmfit, structures similar to this
#9
EMDB-5841
Score: : 0.8502
EttA-bound E. coli 70S ribosome complex containing P-site tRNA and A-site tRNA (raw map)
View 3D fitting by gmfit, structures similar to this
#10
PDB-4v4b
Score: : 0.8498
Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.
View 3D fitting by gmfit, structures similar to this
#11
EMDB-1920
Score: : 0.8485
Improved ab initio 3D reconstruction of the EF-G containing E. coli ribosome by SIMPLE
View 3D fitting by gmfit, structures similar to this
#12
EMDB-1921
Score: : 0.8481
Improved ab initio 3D reconstruction of the EF-G lacking E. coli ribosome by SIMPLE
View 3D fitting by gmfit, structures similar to this
#13
EMDB-1370
Score: : 0.8477
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits.
View 3D fitting by gmfit, structures similar to this
#14
EMDB-5307
Score: : 0.8474
Three-dimensional cryo-electron microscopy density map of the 70S ribosome from Mycobacterium smegmatis
View 3D fitting by gmfit, structures similar to this
#15
PDB-4v5h
Score: : 0.8469
E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
View 3D fitting by gmfit, structures similar to this
#16
PDB-3j7q
Score: : 0.8462
Structure of the idle mammalian ribosome-Sec61 complex
View 3D fitting by gmfit, structures similar to this
#17
EMDB-1565
Score: : 0.8439
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM
View 3D fitting by gmfit, structures similar to this
#18
PDB-4v69
Score: : 0.8432
Ternary complex-bound E.coli 70S ribosome.
View 3D fitting by gmfit, structures similar to this
#19
EMDB-5784
Score: : 0.8428
EttA-bound E. coli 70S ribosome complex containing P-site tRNA and A-site tRNA
View 3D fitting by gmfit, structures similar to this
#20
PDB-4v7c
Score: : 0.8418
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
View 3D fitting by gmfit, structures similar to this
#21
EMDB-2373
Score: : 0.8411
ribosome-RelA complex
View 3D fitting by gmfit, structures similar to this
#22
EMDB-5785
Score: : 0.8403
EttA-bound E. coli 70S ribosome complex containing P-site tRNA
View 3D fitting by gmfit, structures similar to this
#23
PDB-4v6l
Score: : 0.8402
Structural insights into cognate vs. near-cognate discrimination during decoding.
View 3D fitting by gmfit, structures similar to this
#24
EMDB-5362
Score: : 0.8394
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 6 (rotated 70S ribosome with A-site and P-site tRNAs)
View 3D fitting by gmfit, structures similar to this
#25
PDB-4v5n
Score: : 0.8394
tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
View 3D fitting by gmfit, structures similar to this
#26
EMDB-1854
Score: : 0.8392
An insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1
View 3D fitting by gmfit, structures similar to this
#27
EMDB-2446
Score: : 0.8392
Visualization of a polytopic membrane protein egressing from the SecY complex - Electron cryo-microscopy of an tightly coupled RNC-SecY complex
View 3D fitting by gmfit, structures similar to this
#28
PDB-4v91
Score: : 0.8383
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
View 3D fitting by gmfit, structures similar to this
#29
PDB-4v72
Score: : 0.8378
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)
View 3D fitting by gmfit, structures similar to this
#30
EMDB-1830
Score: : 0.8377
SecM-stalled ribosomes adopt an altered geometry at the peptidyltransferase center
View 3D fitting by gmfit, structures similar to this
#31
EMDB-5036
Score: : 0.8375
Aminoacyl-tRNA-EF-Tu-GDP-kir ternary complex-bound E. coli 70S ribosome
View 3D fitting by gmfit, structures similar to this
#32
PDB-1ml5
Score: : 0.8352
Structure of the E. coli ribosomal termination complex with release factor 2
View 3D fitting by gmfit, structures similar to this
#33
PDB-4v68
Score: : 0.8349
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
View 3D fitting by gmfit, structures similar to this
#34
EMDB-1615
Score: : 0.8349
Three-dimensional structure of YidC bound to the translating ribosome
View 3D fitting by gmfit, structures similar to this
#35
PDB-4v6k
Score: : 0.8349
Structural insights into cognate vs. near-cognate discrimination during decoding.
View 3D fitting by gmfit, structures similar to this
#36
PDB-4v6y
Score: : 0.8345
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)
View 3D fitting by gmfit, structures similar to this
#37
PDB-4v6z
Score: : 0.834
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)
View 3D fitting by gmfit, structures similar to this
#38
PDB-4v75
Score: : 0.8338
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
View 3D fitting by gmfit, structures similar to this
#39
EMDB-1045
Score: : 0.8331
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
View 3D fitting by gmfit, structures similar to this
#40
EMDB-1850
Score: : 0.8331
Near-cognate 70S-TC complex
View 3D fitting by gmfit, structures similar to this
#41
EMDB-2703
Score: : 0.8326
Cryo-EM structure of the mammalian 60S ribosomal subunit in complex with eIF6
View 3D fitting by gmfit, structures similar to this
#42
EMDB-1716
Score: : 0.8324
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy
View 3D fitting by gmfit, structures similar to this
#43
EMDB-5797
Score: : 0.8321
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State
View 3D fitting by gmfit, structures similar to this
#44
PDB-4v7b
Score: : 0.832
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
View 3D fitting by gmfit, structures similar to this
#45
EMDB-2277
Score: : 0.8311
Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
View 3D fitting by gmfit, structures similar to this
#46
EMDB-5030
Score: : 0.8288
GTPase activation of elongation factor EF-Tu by the ribosome during decoding: a cryo-EM structure of the Thermus thermophilus ribosome in which the ternary complex of EF-Tu, tRNA and guanine nucleotide has been trapped on the ribosome with the antibiotic kirromycin.
View 3D fitting by gmfit, structures similar to this
#47
EMDB-1849
Score: : 0.8275
Cognate 70S-TC complex
View 3D fitting by gmfit, structures similar to this
#48
PDB-4v5m
Score: : 0.8268
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
View 3D fitting by gmfit, structures similar to this
#49
EMDB-5798
Score: : 0.826
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State
View 3D fitting by gmfit, structures similar to this
#50
PDB-4v6v
Score: : 0.8258
Tetracycline resistance protein Tet(O) bound to the ribosome
View 3D fitting by gmfit, structures similar to this