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- PDB-4u50: Crystal structure of Verrucarin bound to the yeast 80S ribosome -

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基本情報

登録情報
データベース: PDB / ID: 4u50
タイトルCrystal structure of Verrucarin bound to the yeast 80S ribosome
要素
  • (40S ribosomal protein ...) x 32
  • (60S ribosomal protein ...) x 40
  • (UNKNOWN PROTEIN ...) x 3
  • 18S ribosomal RNA
  • 25S ribosomal RNAリボソームRNA
  • 5.8S ribosomal RNA5.8SリボソームRNA
  • 5S ribosomal RNA5SリボソームRNA
  • 60S acidic ribosomal protein P0
  • Guanine nucleotide-binding protein subunit beta-like protein
  • Suppressor protein STM1
  • Ubiquitin-40S ribosomal protein S31
  • Ubiquitin-60S ribosomal protein L40
キーワードRIBOSOME (リボソーム) / translation (翻訳 (生物学)) / 40S / 60S / 80S / eukaryote (真核生物) / RNA-protein complex / inhibitor (酵素阻害剤) / antibiotic (抗生物質)
機能・相同性
機能・相同性情報


triplex DNA binding / ribosome hibernation / translation elongation factor binding / regulation of translational initiation in response to stress / Platelet degranulation / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / negative regulation of glucose mediated signaling pathway / negative regulation of translational frameshifting / Protein methylation / RMTs methylate histone arginines ...triplex DNA binding / ribosome hibernation / translation elongation factor binding / regulation of translational initiation in response to stress / Platelet degranulation / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / negative regulation of glucose mediated signaling pathway / negative regulation of translational frameshifting / Protein methylation / RMTs methylate histone arginines / positive regulation of translational fidelity / mTORC1-mediated signalling / ribosome-associated ubiquitin-dependent protein catabolic process / ヒドロキシル化 / GDP-dissociation inhibitor activity / : / pre-mRNA 5'-splice site binding / positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition / cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / preribosome, small subunit precursor / translational elongation / response to cycloheximide / telomeric DNA binding / mRNA destabilization / MTOR / Major pathway of rRNA processing in the nucleolus and cytosol / SRP-dependent cotranslational protein targeting to membrane / 90S preribosome / GTP hydrolysis and joining of the 60S ribosomal subunit / Formation of a pool of free 40S subunits / endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / protein-RNA complex assembly / negative regulation of mRNA splicing, via spliceosome / ribosomal small subunit export from nucleus / preribosome, large subunit precursor / L13a-mediated translational silencing of Ceruloplasmin expression / translation regulator activity / ribosomal large subunit export from nucleus / G-protein alpha-subunit binding / endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / regulation of translational fidelity / positive regulation of protein kinase activity / rescue of stalled ribosome / translational termination / maturation of SSU-rRNA / translation repressor activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / maturation of LSU-rRNA / ribosomal large subunit biogenesis / DNA-(apurinic or apyrimidinic site) endonuclease activity / cellular response to amino acid starvation / ribosome assembly / telomere maintenance / small-subunit processome / protein kinase C binding / maintenance of translational fidelity / オートファジー / modification-dependent protein catabolic process / ribosomal small subunit biogenesis / ribosomal large subunit assembly / small ribosomal subunit rRNA binding / protein tag activity / ribosomal small subunit assembly / rRNA processing / cytoplasmic stress granule / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome binding / リボソーム生合成 / small ribosomal subunit / cytoplasmic translation / 5S rRNA binding / cytosolic large ribosomal subunit / negative regulation of translation / rRNA binding / protein ubiquitination / リボソーム / structural constituent of ribosome / positive regulation of protein phosphorylation / 翻訳 (生物学) / G protein-coupled receptor signaling pathway / response to antibiotic / negative regulation of gene expression / mRNA binding / ubiquitin protein ligase binding / 核小体 / negative regulation of apoptotic process / perinuclear region of cytoplasm / ミトコンドリア / DNA binding / RNA binding / zinc ion binding / 核質 / metal ion binding
類似検索 - 分子機能
Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / 50S ribosomal protein L10, insertion domain superfamily / : / Ribosomal protein S12e ...Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / 50S ribosomal protein L10, insertion domain superfamily / : / Ribosomal protein S12e / 60S ribosomal protein L10P, insertion domain / Small (40S) ribosomal subunit Asc1/RACK1 / Insertion domain in 60S ribosomal protein L10P / Ribosomal protein S21e, conserved site / Ribosomal protein S26e / Ribosomal protein S26e superfamily / Ribosomal protein S19e, conserved site / Ribosomal protein L29e / S27a-like superfamily / Ribosomal protein S26e / Ribosomal protein S26e signature. / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S17e, conserved site / Ribosomal protein S25 / : / Ribosomal protein S2, eukaryotic / Ribosomal protein S30 / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S27a / Ribosomal L29e protein family / Ribosomal protein S27a / Ribosomal protein S21e / Ribosomal protein S21e superfamily / Ribosomal protein S21e / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein L10e, conserved site / Ribosomal protein L27e, conserved site / Ribosomal protein S8e subdomain, eukaryotes / Ribosomal protein L10e / S25 ribosomal protein / Ribosomal protein S21e signature. / Ribosomal protein S19A/S15e / Ribosomal protein S3Ae, conserved site / Ribosomal protein S30 / Ribosomal protein S12e signature. / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal protein S27a / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein S19e / Ribosomal_S19e / Ribosomal protein S5, eukaryotic/archaeal / 40S ribosomal protein S11, N-terminal / : / Ribosomal protein S8e, conserved site / Ribosomal protein L24e, conserved site / 40S ribosomal protein S1/3, eukaryotes / Ribosomal protein S6, eukaryotic / Ribosomal protein L34e, conserved site / Ribosomal protein S7e / Ribosomal protein S4e, N-terminal, conserved site / 40S ribosomal protein S4, C-terminal domain / Eukaryotic Ribosomal Protein L27, KOW domain / Ribosomal protein S19e signature. / Ribosomal protein L44e / Ribosomal protein L38e / Ribosomal protein L38e superfamily / Ribosomal protein L27e / Ribosomal protein L27e superfamily / Ribosomal S17 / Ribosomal protein L22e / Ribosomal protein L22e superfamily / Ribosomal protein L23/L25, N-terminal / Ribosomal L38e protein family / Ribosomal protein S19e / Ribosomal protein S27, zinc-binding domain superfamily / Ribosomal L22e protein family / Ribosomal protein S17, archaeal/eukaryotic / 40S Ribosomal protein S10 / 60S ribosomal protein L35 / Ribosomal protein S27 / Ribosomal protein L35Ae, conserved site / Ribosomal protein S28e conserved site / Ribosomal protein S6/S6e/A/B/2, conserved site / Ribosomal protein L30e, conserved site / Ribosomal protein S28e / 40S ribosomal protein S4 C-terminus / Ribosomal protein S4e, N-terminal / Ribosomal_S17 N-terminal / Ribosomal protein L23, N-terminal domain / Ribosomal protein S23, eukaryotic/archaeal / Ribosomal protein L44 / Ribosomal protein L34Ae / Ribosomal protein L13e, conserved site / Ribosomal protein L13e signature. / Ribosomal protein S3Ae / Plectin/S10, N-terminal / Ribosomal S3Ae family / Ribosomal protein S7e / Ribosomal L27e protein family
類似検索 - ドメイン・相同性
Chem-3L2 / osmium (III) hexammine / : / : / リボ核酸 / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : / Small ribosomal subunit protein uS4A ...Chem-3L2 / osmium (III) hexammine / : / : / リボ核酸 / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : / Small ribosomal subunit protein uS4A / Large ribosomal subunit protein uL15 / Small ribosomal subunit protein eS17A / Large ribosomal subunit protein eL24A / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL30A / Large ribosomal subunit protein uL6A / Large ribosomal subunit protein uL22A / Large ribosomal subunit protein uL24A / Large ribosomal subunit protein eL33A / Large ribosomal subunit protein eL36A / Large ribosomal subunit protein eL29 / Large ribosomal subunit protein eL15A / Large ribosomal subunit protein eL22A / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS15 / Ubiquitin-ribosomal protein eS31 fusion protein / Small ribosomal subunit protein uS11A / Small ribosomal subunit protein eS19A / Small ribosomal subunit protein eS21A / Small ribosomal subunit protein uS8A / Large ribosomal subunit protein eL27A / Large ribosomal subunit protein eL31A / Ubiquitin-ribosomal protein eL40A fusion protein / Large ribosomal subunit protein eL20A / Large ribosomal subunit protein eL43A / Large ribosomal subunit protein eL42A / Small ribosomal subunit protein uS12A / Small ribosomal subunit protein eS24A / Small ribosomal subunit protein eS30A / Small ribosomal subunit protein eS4A / Small ribosomal subunit protein eS6A / Small ribosomal subunit protein eS8A / Large ribosomal subunit protein uL14A / Large ribosomal subunit protein uL2A / Small ribosomal subunit protein uS17A / Large ribosomal subunit protein eL18A / Small ribosomal subunit protein uS9A / Small ribosomal subunit protein uS13A / Large ribosomal subunit protein eL19A / Large ribosomal subunit protein uL29A / Large ribosomal subunit protein uL4A / Large ribosomal subunit protein eL30 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein eL8A / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL13A / Small ribosomal subunit protein eS7A / Small ribosomal subunit protein uS2A / Small ribosomal subunit protein eS1A / Small ribosomal subunit protein eS27A / Large ribosomal subunit protein eL14A / Small ribosomal subunit protein RACK1 / Large ribosomal subunit protein eL32 / Small ribosomal subunit protein uS10 / Suppressor protein STM1 / Small ribosomal subunit protein eS26B / Small ribosomal subunit protein uS14A / Large ribosomal subunit protein uL16 / Small ribosomal subunit protein eS12 / Large ribosomal subunit protein eL37A / Large ribosomal subunit protein eL38 / Large ribosomal subunit protein eL34A / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein eL6A / Large ribosomal subunit protein eL21A / Small ribosomal subunit protein eS10A / Large ribosomal subunit protein eL13A / Large ribosomal subunit protein uL5B / Small ribosomal subunit protein eS25A / Small ribosomal subunit protein eS28A
類似検索 - 構成要素
生物種Saccharomyces cerevisiae S288c (パン酵母)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.2 Å
データ登録者Garreau de Loubresse, N. / Prokhorova, I. / Yusupova, G. / Yusupov, M.
引用ジャーナル: Nature / : 2014
タイトル: Structural basis for the inhibition of the eukaryotic ribosome.
著者: Garreau de Loubresse, N. / Prokhorova, I. / Holtkamp, W. / Rodnina, M.V. / Yusupova, G. / Yusupov, M.
履歴
登録2014年7月24日登録サイト: RCSB / 処理サイト: PDBE
改定 1.02014年10月22日Provider: repository / タイプ: Initial release
置き換え2014年12月10日ID: 4ulp, 4ulq, 4ulr, 4uls, 4ult
改定 1.12014年12月10日Group: Other
改定 1.22014年12月17日Group: Other
改定 1.32015年1月21日Group: Derived calculations
改定 1.42016年1月20日Group: Structure summary
改定 1.52018年7月18日Group: Advisory / Data collection ...Advisory / Data collection / Derived calculations / Source and taxonomy
カテゴリ: database_PDB_caveat / entity_src_nat ...database_PDB_caveat / entity_src_nat / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / struct_conn / struct_conn_type
Item: _entity_src_nat.pdbx_organism_scientific
改定 1.62023年12月20日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
2: 18S ribosomal RNA
S0: 40S ribosomal protein S0-A
S1: 40S ribosomal protein S1-A
S2: 40S ribosomal protein S2
S3: 40S ribosomal protein S3
S4: 40S ribosomal protein S4-A
S5: 40S ribosomal protein S5
S6: 40S ribosomal protein S6-A
S7: 40S ribosomal protein S7-A
S8: 40S ribosomal protein S8-A
S9: 40S ribosomal protein S9-A
C0: 40S ribosomal protein S10-A
C1: 40S ribosomal protein S11-A
C2: 40S ribosomal protein S12
C3: 40S ribosomal protein S13
C4: 40S ribosomal protein S14-A
C5: 40S ribosomal protein S15
C6: 40S ribosomal protein S16-A
C7: 40S ribosomal protein S17-A
C8: 40S ribosomal protein S18-A
C9: 40S ribosomal protein S19-A
D0: 40S ribosomal protein S20
D1: 40S ribosomal protein S21-A
D2: 40S ribosomal protein S22-A
D3: 40S ribosomal protein S23-A
D4: 40S ribosomal protein S24-A
D5: 40S ribosomal protein S25-A
D6: 40S ribosomal protein S26-B
D7: 40S ribosomal protein S27-A
D8: 40S ribosomal protein S28-A
D9: 40S ribosomal protein S29-A
E0: 40S ribosomal protein S30-A
E1: Ubiquitin-40S ribosomal protein S31
SR: Guanine nucleotide-binding protein subunit beta-like protein
SM: Suppressor protein STM1
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
L2: 60S ribosomal protein L2-A
L3: 60S ribosomal protein L3
L4: 60S ribosomal protein L4-A
L5: 60S ribosomal protein L5
L6: 60S ribosomal protein L6-A
L7: 60S ribosomal protein L7-A
L8: 60S ribosomal protein L8-A
L9: 60S ribosomal protein L9-A
M0: 60S ribosomal protein L10
M1: 60S ribosomal protein L11-B
M3: 60S ribosomal protein L13-A
M4: 60S ribosomal protein L14-A
M5: 60S ribosomal protein L15-A
M6: 60S ribosomal protein L16-A
M7: 60S ribosomal protein L17-A
M8: 60S ribosomal protein L18-A
M9: 60S ribosomal protein L19-A
N0: 60S ribosomal protein L20-A
N1: 60S ribosomal protein L21-A
N2: 60S ribosomal protein L22-A
N3: 60S ribosomal protein L23-A
N4: 60S ribosomal protein L24-A
N5: 60S ribosomal protein L25
N6: 60S ribosomal protein L26-A
N7: 60S ribosomal protein L27-A
N8: 60S ribosomal protein L28
N9: 60S ribosomal protein L29
O0: 60S ribosomal protein L30
O1: 60S ribosomal protein L31-A
O2: 60S ribosomal protein L32
O3: 60S ribosomal protein L33-A
O4: 60S ribosomal protein L34-A
O5: 60S ribosomal protein L35-A
O6: 60S ribosomal protein L36-A
O7: 60S ribosomal protein L37-A
O8: 60S ribosomal protein L38
O9: 60S ribosomal protein L39
Q0: Ubiquitin-60S ribosomal protein L40
Q1: 60S ribosomal protein L41-A
Q2: 60S ribosomal protein L42-A
Q3: 60S ribosomal protein L43-A
6: 18S ribosomal RNA
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-A
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
sM: Suppressor protein STM1
5: 25S ribosomal RNA
7: 5S ribosomal RNA
8: 5.8S ribosomal RNA
l2: 60S ribosomal protein L2-A
l3: 60S ribosomal protein L3
l4: 60S ribosomal protein L4-A
l5: 60S ribosomal protein L5
l6: 60S ribosomal protein L6-A
l7: 60S ribosomal protein L7-A
l8: 60S ribosomal protein L8-A
l9: 60S ribosomal protein L9-A
m0: 60S ribosomal protein L10
m1: 60S ribosomal protein L11-B
m3: 60S ribosomal protein L13-A
m4: 60S ribosomal protein L14-A
m5: 60S ribosomal protein L15-A
m6: 60S ribosomal protein L16-A
m7: 60S ribosomal protein L17-A
m8: 60S ribosomal protein L18-A
m9: 60S ribosomal protein L19-A
n0: 60S ribosomal protein L20-A
n1: 60S ribosomal protein L21-A
n2: 60S ribosomal protein L22-A
n3: 60S ribosomal protein L23-A
n4: 60S ribosomal protein L24-A
n5: 60S ribosomal protein L25
n6: 60S ribosomal protein L26-A
n7: 60S ribosomal protein L27-A
n8: 60S ribosomal protein L28
n9: 60S ribosomal protein L29
o0: 60S ribosomal protein L30
o1: 60S ribosomal protein L31-A
o2: 60S ribosomal protein L32
o3: 60S ribosomal protein L33-A
o4: 60S ribosomal protein L34-A
o5: 60S ribosomal protein L35-A
o6: 60S ribosomal protein L36-A
o7: 60S ribosomal protein L37-A
o8: 60S ribosomal protein L38
o9: 60S ribosomal protein L39
q0: Ubiquitin-60S ribosomal protein L40
q1: 60S ribosomal protein L41-A
q2: 60S ribosomal protein L42-A
q3: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
m2: UNKNOWN PROTEIN m2
p1: UNKNOWN PROTEIN p1
p2: UNKNOWN PROTEIN p2
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)6,631,8082722
ポリマ-6,271,321162
非ポリマー360,4872560
0
1
2: 18S ribosomal RNA
S0: 40S ribosomal protein S0-A
S1: 40S ribosomal protein S1-A
S2: 40S ribosomal protein S2
S3: 40S ribosomal protein S3
S4: 40S ribosomal protein S4-A
S5: 40S ribosomal protein S5
S6: 40S ribosomal protein S6-A
S7: 40S ribosomal protein S7-A
S8: 40S ribosomal protein S8-A
S9: 40S ribosomal protein S9-A
C0: 40S ribosomal protein S10-A
C1: 40S ribosomal protein S11-A
C2: 40S ribosomal protein S12
C3: 40S ribosomal protein S13
C4: 40S ribosomal protein S14-A
C5: 40S ribosomal protein S15
C6: 40S ribosomal protein S16-A
C7: 40S ribosomal protein S17-A
C8: 40S ribosomal protein S18-A
C9: 40S ribosomal protein S19-A
D0: 40S ribosomal protein S20
D1: 40S ribosomal protein S21-A
D2: 40S ribosomal protein S22-A
D3: 40S ribosomal protein S23-A
D4: 40S ribosomal protein S24-A
D5: 40S ribosomal protein S25-A
D6: 40S ribosomal protein S26-B
D7: 40S ribosomal protein S27-A
D8: 40S ribosomal protein S28-A
D9: 40S ribosomal protein S29-A
E0: 40S ribosomal protein S30-A
E1: Ubiquitin-40S ribosomal protein S31
SR: Guanine nucleotide-binding protein subunit beta-like protein
SM: Suppressor protein STM1
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
L2: 60S ribosomal protein L2-A
L3: 60S ribosomal protein L3
L4: 60S ribosomal protein L4-A
L5: 60S ribosomal protein L5
L6: 60S ribosomal protein L6-A
L7: 60S ribosomal protein L7-A
L8: 60S ribosomal protein L8-A
L9: 60S ribosomal protein L9-A
M0: 60S ribosomal protein L10
M1: 60S ribosomal protein L11-B
M3: 60S ribosomal protein L13-A
M4: 60S ribosomal protein L14-A
M5: 60S ribosomal protein L15-A
M6: 60S ribosomal protein L16-A
M7: 60S ribosomal protein L17-A
M8: 60S ribosomal protein L18-A
M9: 60S ribosomal protein L19-A
N0: 60S ribosomal protein L20-A
N1: 60S ribosomal protein L21-A
N2: 60S ribosomal protein L22-A
N3: 60S ribosomal protein L23-A
N4: 60S ribosomal protein L24-A
N5: 60S ribosomal protein L25
N6: 60S ribosomal protein L26-A
N7: 60S ribosomal protein L27-A
N8: 60S ribosomal protein L28
N9: 60S ribosomal protein L29
O0: 60S ribosomal protein L30
O1: 60S ribosomal protein L31-A
O2: 60S ribosomal protein L32
O3: 60S ribosomal protein L33-A
O4: 60S ribosomal protein L34-A
O5: 60S ribosomal protein L35-A
O6: 60S ribosomal protein L36-A
O7: 60S ribosomal protein L37-A
O8: 60S ribosomal protein L38
O9: 60S ribosomal protein L39
Q0: Ubiquitin-60S ribosomal protein L40
Q1: 60S ribosomal protein L41-A
Q2: 60S ribosomal protein L42-A
Q3: 60S ribosomal protein L43-A
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)3,284,6691322
ポリマ-3,107,94579
非ポリマー176,7241243
0
タイプ名称対称操作
identity operation1_555x,y,z1
2
6: 18S ribosomal RNA
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-A
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
sM: Suppressor protein STM1
5: 25S ribosomal RNA
7: 5S ribosomal RNA
8: 5.8S ribosomal RNA
l2: 60S ribosomal protein L2-A
l3: 60S ribosomal protein L3
l4: 60S ribosomal protein L4-A
l5: 60S ribosomal protein L5
l6: 60S ribosomal protein L6-A
l7: 60S ribosomal protein L7-A
l8: 60S ribosomal protein L8-A
l9: 60S ribosomal protein L9-A
m0: 60S ribosomal protein L10
m1: 60S ribosomal protein L11-B
m3: 60S ribosomal protein L13-A
m4: 60S ribosomal protein L14-A
m5: 60S ribosomal protein L15-A
m6: 60S ribosomal protein L16-A
m7: 60S ribosomal protein L17-A
m8: 60S ribosomal protein L18-A
m9: 60S ribosomal protein L19-A
n0: 60S ribosomal protein L20-A
n1: 60S ribosomal protein L21-A
n2: 60S ribosomal protein L22-A
n3: 60S ribosomal protein L23-A
n4: 60S ribosomal protein L24-A
n5: 60S ribosomal protein L25
n6: 60S ribosomal protein L26-A
n7: 60S ribosomal protein L27-A
n8: 60S ribosomal protein L28
n9: 60S ribosomal protein L29
o0: 60S ribosomal protein L30
o1: 60S ribosomal protein L31-A
o2: 60S ribosomal protein L32
o3: 60S ribosomal protein L33-A
o4: 60S ribosomal protein L34-A
o5: 60S ribosomal protein L35-A
o6: 60S ribosomal protein L36-A
o7: 60S ribosomal protein L37-A
o8: 60S ribosomal protein L38
o9: 60S ribosomal protein L39
q0: Ubiquitin-60S ribosomal protein L40
q1: 60S ribosomal protein L41-A
q2: 60S ribosomal protein L42-A
q3: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
m2: UNKNOWN PROTEIN m2
p1: UNKNOWN PROTEIN p1
p2: UNKNOWN PROTEIN p2
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)3,347,1391400
ポリマ-3,163,37683
非ポリマー183,7631317
0
タイプ名称対称操作
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)434.390, 285.580, 303.060
Angle α, β, γ (deg.)90.000, 98.990, 90.000
Int Tables number4
Space group name H-MP1211
詳細there are 2 biological units in the asymetric unit (segid *A and segid *B)

-
要素

-
RNA鎖 , 4種, 8分子 26153748

#1: RNA鎖 18S ribosomal RNA / / RNA (1750-MER)


分子量: 579761.938 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: GenBank: 1262303
#36: RNA鎖 25S ribosomal RNA / リボソームRNA


分子量: 1097493.875 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: TPG: 329138943
#37: RNA鎖 5S ribosomal RNA / 5SリボソームRNA / RNA (121-MER)


分子量: 38951.105 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: TPG: 329138943
#38: RNA鎖 5.8S ribosomal RNA / 5.8SリボソームRNA / RNA (158-MER)


分子量: 50682.922 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: GenBank: 618731124

+
40S ribosomal protein ... , 32種, 62分子 S0s0S1s1S2s2S3s3S4s4S5s5S6s6S7s7S8s8S9s9C0c0C1c1C2c2C3c3C4c4...

#2: タンパク質 40S ribosomal protein S0-A / リボソーム / Nucleic acid-binding protein NAB1A


分子量: 27920.133 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P32905
#3: タンパク質 40S ribosomal protein S1-A / リボソーム / RP10A


分子量: 28667.275 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P33442
#4: タンパク質 40S ribosomal protein S2 / / Omnipotent suppressor protein SUP44 / RP12 / S4 / YS5


分子量: 27359.629 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P25443
#5: タンパク質 40S ribosomal protein S3 / / RP13 / YS3


分子量: 26411.596 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05750
#6: タンパク質 40S ribosomal protein S4-A / リボソーム / RP5 / S7 / YS6


分子量: 29338.133 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX35
#7: タンパク質 40S ribosomal protein S5 / / RP14 / S2 / YS8


分子量: 24941.402 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P26783
#8: タンパク質 40S ribosomal protein S6-A / リボソーム / RP9 / S10 / YS4


分子量: 27054.486 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX37
#9: タンパク質 40S ribosomal protein S7-A / リボソーム / RP30 / RP40


分子量: 21527.014 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P26786
#10: タンパク質 40S ribosomal protein S8-A / リボソーム / RP19 / S14 / YS9


分子量: 22537.803 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX39
#11: タンパク質 40S ribosomal protein S9-A / リボソーム / RP21 / S13 / YP28 / YS11


分子量: 22356.695 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: O13516
#12: タンパク質 40S ribosomal protein S10-A / リボソーム


分子量: 12771.471 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q08745
#13: タンパク質 40S ribosomal protein S11-A / リボソーム / RP41 / S18 / YS12


分子量: 17668.766 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX47
#14: タンパク質 40S ribosomal protein S12 /


分子量: 15385.485 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P48589
#15: タンパク質 40S ribosomal protein S13 / / S27a / YS15


分子量: 16928.748 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05756
#16: タンパク質 40S ribosomal protein S14-A / リボソーム / RP59A


分子量: 14431.462 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P06367
#17: タンパク質 40S ribosomal protein S15 / / RIG protein / RP52 / S21 / YS21


分子量: 15830.597 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q01855
#18: タンパク質 40S ribosomal protein S16-A / リボソーム / RP61R


分子量: 15746.292 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX51
#19: タンパク質 40S ribosomal protein S17-A / リボソーム / RP51A


分子量: 15820.413 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P02407
#20: タンパク質 40S ribosomal protein S18-A / リボソーム


分子量: 16940.443 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX55
#21: タンパク質 40S ribosomal protein S19-A / リボソーム / RP55A / S16a / YP45 / YS16A


分子量: 15810.930 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P07280
#22: タンパク質 40S ribosomal protein S20 /


分子量: 13797.850 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P38701
#23: タンパク質 40S ribosomal protein S21-A / リボソーム / S26 / YS25


分子量: 9758.829 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0C0V8
#24: タンパク質 40S ribosomal protein S22-A / リボソーム / RP50 / S24 / YP58 / YS22


分子量: 14518.867 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0C0W1
#25: タンパク質 40S ribosomal protein S23-A / リボソーム / RP37 / S28 / YS14


分子量: 15942.699 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX29
#26: タンパク質 40S ribosomal protein S24-A / リボソーム / RP50


分子量: 15231.650 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX31
#27: タンパク質 40S ribosomal protein S25-A / リボソーム / RP45 / S31 / YS23


分子量: 11936.076 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q3E792
#28: タンパク質 40S ribosomal protein S26-B / リボソーム


分子量: 11022.989 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P39939
#29: タンパク質 40S ribosomal protein S27-A / リボソーム / RP61 / YS20


分子量: 8762.195 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P35997
#30: タンパク質 40S ribosomal protein S28-A / リボソーム / S33 / YS27


分子量: 7474.652 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q3E7X9
#31: タンパク質 40S ribosomal protein S29-A / リボソーム / S36 / YS29


分子量: 6544.527 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P41057
#32: タンパク質 40S ribosomal protein S30-A / リボソーム


分子量: 6779.086 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX33
#80: タンパク質 40S ribosomal protein S30-A / リボソーム


分子量: 7006.346 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX33

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タンパク質 , 5種, 9分子 E1e1SRsRSMsMQ0q0p0

#33: タンパク質 Ubiquitin-40S ribosomal protein S31


分子量: 8717.488 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05759
#34: タンパク質 Guanine nucleotide-binding protein subunit beta-like protein / Receptor for activated C kinase / Receptor of activated protein kinase C 1 / RACK1


分子量: 34710.023 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P38011
#35: タンパク質 Suppressor protein STM1 / 3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / ...3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / Ribosomal subunits association factor / AF / TOM1 suppressor protein 1 / Triplex-binding protein 1


分子量: 30048.010 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P39015
#76: タンパク質 Ubiquitin-60S ribosomal protein L40


分子量: 6032.321 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CH08
#81: タンパク質 60S acidic ribosomal protein P0 / / A0 / L10E


分子量: 33617.930 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05317

+
60S ribosomal protein ... , 40種, 80分子 L2l2L3l3L4l4L5l5L6l6L7l7L8l8L9l9M0m0M1m1M3m3M4m4M5m5M6m6M7m7...

#39: タンパク質 60S ribosomal protein L2-A / リボソーム / L5 / RP8 / YL6


分子量: 27332.377 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX45
#40: タンパク質 60S ribosomal protein L3 / / Maintenance of killer protein 8 / RP1 / Trichodermin resistance protein / YL1


分子量: 43719.602 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P14126
#41: タンパク質 60S ribosomal protein L4-A / リボソーム / L2 / RP2 / YL2


分子量: 39027.926 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P10664
#42: タンパク質 60S ribosomal protein L5 / / L1 / L1a / Ribosomal 5S RNA-binding protein / YL3


分子量: 33633.633 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P26321
#43: タンパク質 60S ribosomal protein L6-A / リボソーム / L17 / RP18 / YL16


分子量: 19869.369 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q02326
#44: タンパク質 60S ribosomal protein L7-A / リボソーム / L6 / RP11 / YL8


分子量: 27555.084 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05737
#45: タンパク質 60S ribosomal protein L8-A / リボソーム / L4 / L4-2 / L7a-1 / Maintenance of killer protein 7 / RP6 / YL5


分子量: 28044.621 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P17076
#46: タンパク質 60S ribosomal protein L9-A / リボソーム / L8 / RP24 / YL11


分子量: 21605.061 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05738
#47: タンパク質 60S ribosomal protein L10 / / L9 / Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein


分子量: 25279.271 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P41805
#48: タンパク質 60S ribosomal protein L11-B / リボソーム / L16 / RP39 / YL22


分子量: 19654.520 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q3E757
#49: タンパク質 60S ribosomal protein L13-A / リボソーム


分子量: 22472.967 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q12690
#50: タンパク質 60S ribosomal protein L14-A / リボソーム


分子量: 15063.870 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P36105
#51: タンパク質 60S ribosomal protein L15-A / リボソーム / L13 / RP15R / YL10 / YP18


分子量: 24351.162 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05748
#52: タンパク質 60S ribosomal protein L16-A / リボソーム / L13a / L21 / RP22 / YL15


分子量: 22116.029 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P26784
#53: タンパク質 60S ribosomal protein L17-A / リボソーム / L20A / YL17


分子量: 20458.322 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05740
#54: タンパク質 60S ribosomal protein L18-A / リボソーム / RP28


分子量: 20478.059 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX49
#55: タンパク質 60S ribosomal protein L19-A / リボソーム / L23 / RP15L / RP33 / YL14


分子量: 21631.121 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX82
#56: タンパク質 60S ribosomal protein L20-A / リボソーム / L18a


分子量: 20478.852 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX23
#57: タンパク質 60S ribosomal protein L21-A / リボソーム


分子量: 18148.066 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: Q02753
#58: タンパク質 60S ribosomal protein L22-A / リボソーム / L1c / RP4 / YL31


分子量: 13580.163 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05749
#59: タンパク質 60S ribosomal protein L23-A / リボソーム / L17a / YL32


分子量: 14362.755 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX41
#60: タンパク質 60S ribosomal protein L24-A / リボソーム / L30 / RP29 / YL21


分子量: 17661.717 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P04449
#61: タンパク質 60S ribosomal protein L25 / / RP16L / YL25 / YP42'


分子量: 15656.417 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P04456
#62: タンパク質 60S ribosomal protein L26-A / リボソーム / L33 / YL33


分子量: 14134.588 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05743
#63: タンパク質 60S ribosomal protein L27-A / リボソーム


分子量: 15437.166 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0C2H6
#64: タンパク質 60S ribosomal protein L28 / / L27a / L29 / RP44 / RP62 / YL24


分子量: 16630.471 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P02406
#65: タンパク質 60S ribosomal protein L29 / / YL43


分子量: 6560.688 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05747
#66: タンパク質 60S ribosomal protein L30 / / L32 / RP73 / YL38


分子量: 11299.168 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P14120
#67: タンパク質 60S ribosomal protein L31-A / リボソーム / L34 / YL28


分子量: 12848.962 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0C2H8
#68: タンパク質 60S ribosomal protein L32 /


分子量: 14678.246 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P38061
#69: タンパク質 60S ribosomal protein L33-A / リボソーム / L37 / RP47 / YL37


分子量: 12045.935 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05744
#70: タンパク質 60S ribosomal protein L34-A / リボソーム


分子量: 13542.001 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P87262
#71: タンパク質 60S ribosomal protein L35-A / リボソーム


分子量: 13811.444 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX84
#72: タンパク質 60S ribosomal protein L36-A / リボソーム / L39 / YL39


分子量: 11020.063 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P05745
#73: タンパク質 60S ribosomal protein L37-A / リボソーム / L43 / YL35 / YP55


分子量: 9746.199 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P49166
#74: タンパク質 60S ribosomal protein L38 /


分子量: 8714.363 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P49167
#75: タンパク質・ペプチド 60S ribosomal protein L39 / / L46 / YL40


分子量: 6227.444 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P04650
#77: タンパク質・ペプチド 60S ribosomal protein L41-A / リボソーム


分子量: 3354.243 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
#78: タンパク質 60S ribosomal protein L42-A / リボソーム / L41 / YL27 / YP44


分子量: 12115.462 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX27
#79: タンパク質 60S ribosomal protein L43-A / リボソーム / L37a / YL35


分子量: 9981.756 Da / 分子数: 2 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
参照: UniProt: P0CX25

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UNKNOWN PROTEIN ... , 3種, 3分子 m2p1p2

#82: タンパク質 UNKNOWN PROTEIN m2


分子量: 13634.798 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
#83: タンパク質・ペプチド UNKNOWN PROTEIN p1


分子量: 4017.944 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)
#84: タンパク質・ペプチド UNKNOWN PROTEIN p2


分子量: 3932.839 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Saccharomyces cerevisiae S288c (パン酵母)

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非ポリマー , 4種, 2560分子

#85: 化合物...
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 1410 / 由来タイプ: 合成 / : Mg
#86: 化合物...
ChemComp-OHX / osmium (III) hexammine / osmium(6+) hexaazanide


分子量: 286.365 Da / 分子数: 1132 / 由来タイプ: 合成 / : H12N6Os
#87: 化合物
ChemComp-ZN / ZINC ION


分子量: 65.409 Da / 分子数: 16 / 由来タイプ: 合成 / : Zn
#88: 化合物 ChemComp-3L2 / (4S,5R,10E,12Z,16R,16aS,17S,18R,19aR,23aR)-4-hydroxy-5,16a,21-trimethyl-4,5,6,7,16,16a,22,23-octahydro-3H,18H,19aH-spiro[16,18-methano[1,6,12]trioxacyclooctadecino[3,4-d]chromene-17,2'-oxirane]-3,9,14-trione / Verrucarin A / Verrucarin A


分子量: 502.553 Da / 分子数: 2 / 由来タイプ: 合成 / : C27H34O9 / コメント: 毒素*YM

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 3.02 Å3/Da / 溶媒含有率: 59.3 %
結晶化温度: 277 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7.5
詳細: PEG 20K, KSCN, Mg Acetate, Tris-Acetate, Glycerol, Spermidine

-
データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: SOLEIL / ビームライン: PROXIMA 1 / 波長: 1 Å
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2013年7月1日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1 Å / 相対比: 1
反射解像度: 3.2→49.88 Å / Num. obs: 1195096 / % possible obs: 99.9 % / Observed criterion σ(I): -3 / 冗長度: 4.11 % / Biso Wilson estimate: 72.42 Å2 / Rmerge F obs: 0.967 / Rmerge(I) obs: 0.345 / Rrim(I) all: 0.395 / Χ2: 0.925 / Net I/σ(I): 5.59 / Num. measured all: 4861213
反射 シェル

Diffraction-ID: 1 / Rejects: 0

解像度 (Å)最高解像度 (Å)Rmerge F obsRmerge(I) obsMean I/σ(I) obsNum. measured obsNum. possibleNum. unique obsRrim(I) all% possible all
3.2-3.30.282.2370.954323661052651051102.55499.9
3.3-3.40.3631.6581.236804293322932001.90899.9
3.4-3.50.4861.2831.5334262882836827621.46699.9
3.5-40.7410.742.6412265313013183011060.84699.9
4-50.9350.3115.6912138292989072986670.35599.9
5-100.9850.13710.7311237342752392750410.15699.9
10-200.9960.05221.8413666434806346660.0699.6
20-300.9980.03430.5913944356335200.0498.8
30-400.9970.03232.7529818818110.03892.1
40-500.9970.03514.594943232130.04565.9
50349

-
解析

ソフトウェア
名称バージョン分類
XDSデータ削減
PHENIX(phenix.refine: dev_1702)精密化
PDB_EXTRACT3.14データ抽出
XSCALEデータスケーリング
XSCALEデータ削減
精密化構造決定の手法: 分子置換
開始モデル: 3U5B, 3U5C, 3U5D, 3U5E, 3U5F, 3U5G, 3U5H, 3U5I3u5bPDB 未公開エントリ3u5cPDB 未公開エントリ3u5dPDB 未公開エントリ3u5ePDB 未公開エントリ3u5fPDB ...開始モデル: 3U5B, 3U5C, 3U5D, 3U5E, 3U5F, 3U5G, 3U5H, 3U5I

3u5b
PDB 未公開エントリ

3u5c
PDB 未公開エントリ

3u5d
PDB 未公開エントリ

3u5e
PDB 未公開エントリ

3u5f
PDB 未公開エントリ

3u5g
PDB 未公開エントリ

3u5h
PDB 未公開エントリ

3u5i
PDB 未公開エントリ


解像度: 3.2→49.88 Å / SU ML: 0.44 / 交差検証法: FREE R-VALUE / σ(F): 0 / 位相誤差: 25.76 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2619 23895 2 %
Rwork0.2122 1170845 -
obs0.2132 1194740 99.86 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 273.29 Å2 / Biso mean: 65.147 Å2 / Biso min: 10.72 Å2
精密化ステップサイクル: final / 解像度: 3.2→49.88 Å
タンパク質核酸リガンド溶媒全体
原子数179692 222116 11002 0 412810
Biso mean--111.26 --
残基数----32990
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.011438213
X-RAY DIFFRACTIONf_angle_d1.546650261
X-RAY DIFFRACTIONf_chiral_restr0.06179434
X-RAY DIFFRACTIONf_plane_restr0.00741796
X-RAY DIFFRACTIONf_dihedral_angle_d19.015194820
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.2-3.23630.34577940.30823888039674100
3.2363-3.27440.35727930.3043889439687100
3.2744-3.31430.33897950.2913898439779100
3.3143-3.35630.31147940.27483893539729100
3.3563-3.40040.32237950.27283893439729100
3.4004-3.4470.31817950.27023894439739100
3.447-3.49620.3087930.26143889939692100
3.4962-3.54840.31187950.2543895239747100
3.5484-3.60380.29167960.23753899039786100
3.6038-3.66290.28447960.23353896539761100
3.6629-3.72610.29317940.22883895839752100
3.7261-3.79380.28237980.2243904939847100
3.7938-3.86670.27067950.21133895739752100
3.8667-3.94560.25627960.19923902339819100
3.9456-4.03140.25517950.19613895939754100
4.0314-4.12510.23927960.18953901139807100
4.1251-4.22820.2537950.1913896939764100
4.2282-4.34250.22987970.18133903739834100
4.3425-4.47020.22957970.17943904539842100
4.4702-4.61440.24617970.1833906239859100
4.6144-4.77920.23657960.17783899539791100
4.7792-4.97040.23577980.18283912239920100
4.9704-5.19630.22437980.17353911539913100
5.1963-5.470.22217980.17663906139859100
5.47-5.81220.23257970.18413907939876100
5.8122-6.26020.24718000.19023916039960100
6.2602-6.88870.26628000.20533921840018100
6.8887-7.88220.25658000.20723922540025100
7.8822-9.91790.26088020.22183928640088100
9.9179-49.89530.24988000.2349391373993798
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.6165-0.0877-0.53140.27280.07860.90210.0579-0.1043-0.18090.2432-0.09470.05820.12650.03680.01550.635-0.38470.47481.0502-0.32351.0857-110.4713-8.0194109.7736
20.4387-0.40560.12610.6339-0.05250.2676-0.0543-0.2607-0.33190.4582-0.1072-0.07210.2663-0.01590.07411.3607-0.20760.08270.86560.29770.837-46.9518-27.6868138.6665
30.56380.054-0.28390.36970.1020.6641-0.0055-0.07040.10750.130.04460.29310.0388-0.3568-0.08650.3878-0.06790.04740.9998-0.31270.9438-100.82539.731876.5677
40.39690.23880.03790.3932-0.09360.1670.04110.04180.05770.021-0.01760.20180.0522-0.1029-0.03910.5056-0.1567-0.03391.126-0.37410.9654-99.3645-28.959345.6583
50.2764-0.0846-0.17040.37710.05520.4873-0.0154-0.03280.15770.0875-0.02490.269-0.0504-0.25330.04670.63310.32070.03640.878-0.05140.9419-79.688581.039970.8688
60.3744-0.28840.20560.29960.09040.9222-0.0705-0.2028-0.1470.08080.0205-0.02240.3008-0.0395-0.03241.1057-0.30480.03550.6573-0.15830.7491-76.3836-76.769490.5285
70.2648-0.0333-0.1870.4272-0.06530.3834-0.05420.14510.2056-0.2681-0.09550.0051-0.2346-0.11790.14450.84320.2494-0.02970.69810.15950.8808-29.903797.890948.5335
80.5607-0.0962-0.17520.48650.11440.59250.0163-0.26260.17080.2244-0.05620.0357-0.205-0.1619-0.22070.82040.0120.58611.0686-0.38010.8757-97.455447.976135.8714
90.3210.02-0.06820.98170.27090.43140.0753-0.10980.23750.1938-0.0630.0609-0.2107-0.0171-0.0520.67950.09250.16080.5117-0.1530.724-31.366288.826494.3989
100.50350.0485-0.02140.51020.08670.40630.0350.1177-0.0586-0.14010.05280.3691-0.1309-0.1295-0.07460.4950.1709-0.18131.1735-0.13081.1653-96.32141.564748.1235
110.13780.0632-0.09290.9571-0.15991.22870.05490.25780.0272-0.23090.02270.0448-0.1371-0.1904-0.08250.6371-0.2959-0.10171.2534-0.14150.7705-86.3732-32.808713.7698
120.95780.61530.14021.22170.27390.33850.1293-0.2697-0.01290.2518-0.26360.0437-0.0657-0.03820.07630.58530.11240.14710.6439-0.12930.6153-52.132266.955104.4985
131.2291-0.757-0.17660.886-0.39780.6440.09280.02010.1475-0.04110.08630.0207-0.0757-0.0637-0.10061.4716-0.19150.00581.64970.03471.1712-79.2875-25.6815-18.2949
140.418-0.1791-0.36090.38950.19280.5376-0.0472-0.11910.0810.31640.00290.1368-0.1197-0.0896-0.01180.6912-0.16520.21650.7895-0.1890.495-60.388630.0901131.4022
150.094-0.09650.07340.3774-0.04530.05990.0537-0.1351-0.15520.3627-0.0952-0.02450.172-0.0413-0.01441.0251-0.21250.05960.42640.12341.0453-44.7469-39.3581115.6191
160.49220.2272-0.30310.9802-0.09530.9155-0.0880.0083-0.1259-0.24-0.0598-0.0910.1455-0.01240.05910.5537-0.21490.14340.916-0.531.0433-46.7734-69.736721.6352
170.40780.432-0.15480.7678-0.19630.1586-0.09360.01860.00970.14920.0295-0.08670.1424-0.06410.03711.0208-0.51630.20950.8692-0.43840.933-97.7874-76.901673.1083
180.0661-0.02880.04950.48090.69561.14790.08630.1484-0.32430.0070.01580.0990.03290.06920.05060.6294-0.38070.27060.8859-0.34280.8967-111.8393-30.078897.989
190.32330.1084-0.11640.45190.01240.106-0.0191-0.087-0.18190.17670.1404-0.12660.34460.0527-0.02470.7428-0.10580.03980.8386-0.39611.1988-49.1391-89.817449.0354
200.45050.06240.20970.66790.17070.5478-0.20950.1313-0.12420.027-0.008-0.22570.18630.0038-0.02970.957-0.41850.24970.781-0.46351.183-82.5214-94.778951.6417
212.05910.88380.71810.79690.43930.59230.02750.1610.1632-0.19810.00320.39140.0069-0.1403-0.0230.5866-0.3377-0.04181.1709-0.44031.1574-107.2025-55.552842.9266
220.5399-0.21770.18160.3641-0.0550.8634-0.01870.14790.0490.12420.09150.20290.0124-0.241-0.09130.5505-0.10190.41261.1236-0.32651.1046-110.674912.0991101.1151
230.5210.03590.11420.20430.07070.33650.02390.11460.21060.1399-0.10420.1811-0.0157-0.2077-0.06460.43250.01230.3260.9042-0.24050.7831-89.766633.1883101.4289
240.21210.0058-0.0180.43250.24620.1746-0.06070.1260.0434-0.02120.02870.08250.11980.03680.0050.3847-0.01750.08180.6449-0.09240.4592-54.330521.450756.0588
250.563-0.13930.34410.5640.02890.5173-0.07740.19460.054-0.33240.14230.2879-0.113-0.3157-0.07960.81940.3158-0.18361.05610.09420.8838-73.895676.79633.3585
260.2315-0.2511-0.04970.26880.05310.0094-0.0887-0.2531-0.02610.127-0.1235-0.10280.06290.11090.10681.6282-0.21740.05111.0131-0.15421.364-63.6378-101.740881.1498
270.4725-0.03270.02880.13760.17160.2287-0.1082-0.1903-0.31570.14140.00740.24310.3181-0.15480.05310.7932-0.3350.20810.6718-0.05760.9946-61.0964-22.7729109.171
281.049-0.05210.180.87640.00140.19330.0731-0.3420.0710.3714-0.0274-0.1012-0.1385-0.0263-0.06920.813-0.23560.4291.0037-0.07740.7543-80.526617.3877140.8202
290.9252-0.29420.15431.197-0.04511.79850.0532-0.2651-0.03680.33080.0137-0.1552-0.11140.1972-0.01511.3594-0.36380.0671.1509-0.22770.8205-76.0603-56.6698106.9058
300.88950.2159-0.00310.48930.09810.14790.04510.12690.09940.04240.0173-0.05490.0201-0.038-0.02770.4492-0.32850.03680.9972-0.34230.9177-79.5771-47.369736.5232
310.6167-0.63370.05470.6726-0.00860.0652-0.1385-0.0509-0.2733-0.06880.09190.34330.0343-0.26430.02520.60630.00730.01661.073-0.25920.7894-80.337412.815737.3531
320.2170.0329-0.30290.43360.23860.59990.11030.0902-0.0132-0.1814-0.037-0.01640.1017-0.1064-0.00691.14980.06140.1241.6106-0.17170.9405-60.4037-42.6508-7.2484
330.6156-0.1156-0.09540.68030.14370.2712-0.0614-0.15390.11560.17610.07040.21870.1253-0.12120.01970.9065-0.62230.3871.2166-0.42581.1388-132.2246-57.456386.4823
340.1041-0.1072-0.02110.0455-0.0015-0.03850.10120.02110.14840.0232-0.0856-0.1223-0.03830.0206-0.04020.4538-0.1255-0.04130.7848-0.15570.885-54.6369-40.00740.7297
350.1965-0.1301-0.24290.3042-0.00070.55010.0356-0.0805-0.06670.1578-0.05240.07590.022-0.046-0.00720.3965-0.13060.0980.5008-0.0460.3088-3.0089-3.6285124.0402
360.24640.0421-0.02760.2662-0.02260.3260.06420.0920.20470.0398-0.03130.0581-0.2408-0.0362-0.03250.39940.06410.090.29220.13780.491831.974661.063938.5464
370.15240.0478-0.03430.225-0.00530.26260.0003-0.0321-0.06810.0806-0.0727-0.18680.00330.17230.0740.2043-0.0123-0.01980.44150.09990.404392.158-24.502373.3351
380.29520.081-0.07890.6348-0.05660.11490.11130.1698-0.238-0.15350.0449-0.07220.4412-0.13480.00540.8159-0.1259-0.13670.3451-0.26420.789424.1937-92.852230.2855
390.16870.1059-0.16620.4611-0.20.71590.0564-0.012-0.1613-0.0929-0.0569-0.2154-0.12310.07290.02090.2775-0.01190.08840.48420.10540.434105.500412.082312.5034
400.4347-0.0268-0.26770.63050.26370.8171-0.03190.0405-0.003-0.0102-0.0052-0.17950.17580.02670.05220.28280.0290.05260.2533-0.04830.240775.4493-31.18916.9088
410.276-0.3599-0.11260.90630.25280.2455-0.0903-0.1928-0.12880.4120.0070.1856-0.02570.05810.06250.7027-0.14360.10590.77920.1680.366828.3205-39.3705160.8379
420.995-0.2139-0.28720.47870.19230.2902-0.00520.25080.3173-0.22230.08740.0984-0.1104-0.0993-0.06540.41730.084-0.00130.78910.22580.393320.416933.0085-8.8756
430.6528-0.03350.07530.5754-0.17860.4043-0.04050.13130.0021-0.1648-0.09460.18650.0615-0.12670.09640.3483-0.0798-0.08620.646-0.03570.34311.3272-26.962612.3234
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1311.2150.47940.28020.18160.10810.0609-0.16010.24370.1375-0.08290.0297-0.2223-0.09120.24050.12270.6885-0.09780.13281.01790.2130.6116235.811360.507177.7348
1320.2759-0.0465-0.05920.4476-0.0680.29470.0267-0.147-0.04380.0764-0.0204-0.09080.0296-0.0432-0.01770.4142-0.0097-0.01660.27590.03580.2327112.1437-4.0165297.858
1330.1052-0.1675-0.2120.19050.29380.36060.0339-0.0317-0.12360.1219-0.01450.10140.07820.02990.00630.5353-0.024-0.07710.20840.08160.3894123.3717-48.0769270.6881
1340.3683-0.40710.01030.9243-0.45891.5986-0.02330.11140.0949-0.04880.03870.0594-0.2248-0.1381-0.15281.0014-0.147-0.04940.7290.46680.4934161.562785.3879171.1181
1350.5066-0.01620.23090.59290.04890.20180.124-0.21910.19760.0577-0.0731-0.2651-0.02130.0776-0.02260.3777-0.0485-0.01660.20220.0730.4352177.763351.3735251.6864
1360.27310.52510.24980.86660.43920.1667-0.11370.02680.17790.10760.12060.1178-0.20110.07480.01890.765-0.0747-0.02790.35990.06740.7026190.7939100.2665248.1773
1370.20160.0550.03410.0172-0.01480.36-0.00320.2867-0.0764-0.2112-0.00870.0253-0.1219-0.0425-0.04990.6494-0.1143-0.14610.89170.19530.2089141.645416.9402149.2112
1380.4565-0.49320.0260.5544-0.08010.40060.15890.34720.0273-0.09660.05790.0891-0.08240.00580.0850.5932-0.1242-0.31480.77250.14050.331688.54684.6082168.1151
1390.15660.0135-0.13910.22380.06450.61450.02030.157-0.0232-0.17370.0251-0.0312-0.0327-0.0051-0.00890.8189-0.12240.29411.40280.02190.3528207.251618.4632132.9781
1400.1805-0.08950.02480.3492-0.00030.06290.03760.0745-0.0522-0.05190.04940.07050.1617-0.0339-0.08370.5364-0.097-0.11540.3735-0.11430.3985116.0419-55.0046213.4016
1410.02210.1001-0.02772.2423-0.14150.20690.03210.0347-0.0962-0.0709-0.00020.22650.1315-0.05130.00080.5116-0.063-0.17990.33110.01030.4365118.5335-52.5492247.6234
1420.51640.0002-0.510.65490.42161.2620.0563-0.09120.001-0.0313-0.0093-0.20920.0180.31880.03750.4271-0.08980.27981.04490.04860.5006226.810318.5519159.891
1431.5066-0.6888-0.06111.9277-0.23051.3882-0.05250.16910.1071-0.1403-0.01360.2023-0.06-0.22360.05280.444-0.04090.01790.36780.18920.4564134.447671.4268205.0154
1440.99560.10060.50210.20750.18860.64740.07440.0236-0.02730.0310.06830.2083-0.1272-0.2532-0.13790.2751-0.046-0.08210.39430.07430.358486.54870.3365226.4659
1450.9951-0.0883-0.38231.01220.05211.0871-0.02120.12570.1250.00940.03530.0341-0.0762-0.1848-0.04210.22390.00640.0370.2190.0890.357686.034419.4133260.7736
1460.36050.0849-0.20770.0432-0.00850.1694-0.21230.3287-0.1258-0.09570.08960.05230.0650.1830.03360.5842-0.04750.1340.92840.04970.3112186.987921.5156158.2227
1470.27840.08160.06040.7219-0.15790.10730.01250.3765-0.0224-0.29170.10810.0250.1611-0.0742-0.08550.6911-0.0918-0.13270.9114-0.02650.2726121.9194-9.5403149.089
1480.63550.4298-0.16140.3158-0.13810.40850.0244-0.0351-0.2191-0.09740.0255-0.10110.25460.25160.0120.79040.1386-0.01730.502-0.27520.533155.5903-68.1219179.4881
1490.38050.4360.22380.86490.53190.9454-0.06930.280.126-0.1283-0.03360.00950.0733-0.15670.10570.5413-0.0374-0.01890.56380.00350.2355135.6177-2.2705176.2702
1500.61840.1154-0.38531.6813-0.27391.03950.0695-0.01220.1297-0.1844-0.0833-0.1499-0.06950.14820.05190.8924-0.07220.07710.97070.37740.3895166.318252.7984138.2239
1510.8345-0.17010.19030.4449-0.00430.54190.0713-0.14360.1071-0.09950.08690.17330.00240.0452-0.10670.5006-0.062-0.08730.64560.14620.3879128.135219.1211177.7248
1520.60640.13450.2591.31920.69691.3872-0.1348-0.10190.00130.15440.0616-0.09150.03520.060.10230.4056-0.0297-0.09270.2116-0.05260.3057153.335728.1484295.3657
1530.6194-0.6345-0.64110.64620.65430.659-0.01640.2265-0.0075-0.2097-0.154-0.0085-0.1221-0.15430.09380.3179-0.0994-0.00520.3413-0.03630.4984213.55599.609228.3839
1540.2687-0.3423-0.021.1723-0.68590.8449-0.07030.09410.0376-0.0575-0.0586-0.34210.22520.02510.10090.60360.0824-0.0630.2607-0.13660.4581159.181-58.8704231.3778
1550.4325-0.1833-0.31880.15510.25090.72850.11250.18320.1048-0.19680.0348-0.2285-0.12840.0983-0.07240.3922-0.02260.12890.63320.02560.3653205.479412.0434185.364
1561.21250.1471-0.26030.6331-0.26330.9036-0.0498-0.30270.30290.2911-0.05430.03660.028-0.08910.11681.3031-0.2133-0.0160.7286-0.0590.6442133.822115.1824349.1796
1570.40770.03820.15660.74470.04050.0614-0.0430.03560.14880.0115-0.0207-0.1974-0.1090.22440.03161.8454-0.12540.26021.8999-0.02531.7457116.995415.4973368.3437
1580.0003-0.00120.00010.0035-0.00110.00090.00140.10980.0545-0.06460.00330.256-0.093-0.2912-0.00832.48740.01650.16452.42020.0042.3352102.236312.7023377.047
1590.21550.009-0.05050.1261-0.02460.18090.0423-0.03320.02750.0443-0.0423-0.0072-0.0248-0.0154-0.00930.248-0.0607-0.00590.2786-0.00670.273439.21452.136575.6664
1600.66890.1068-0.25810.0133-0.03810.0976-0.0033-0.1339-0.33860.10790.17980.73960.2105-0.6449-0.07810.9025-0.3859-0.10621.54060.02151.3776-17.1254-48.646514.9116
1610.14860.06450.02660.02530.01150.0021-0.18030.0197-0.0922-0.04560.02090.87570.0997-0.48090.0951.35190.1086-0.14591.8115-0.09151.3877-2.3595-0.1363-24.9655
1620.3214-0.3129-0.47110.59050.39560.7011-0.1224-0.70810.45690.5187-0.178-0.1162-0.5415-0.07190.25111.1455-0.06380.0131.0823-0.16510.765628.06350.9879155.7337
1630.83740.4737-0.57680.96480.12090.70190.18080.0862-0.0307-0.1019-0.03230.08490.1754-0.0117-0.09680.669-0.02160.08540.785-0.25370.7058-29.7111-15.591861.5271
1640.133-0.02210.3590.0041-0.05511.0202-0.0165-0.1786-0.6295-0.0410.13610.69150.7833-0.7078-0.08522.1081-0.1849-0.04662.1693-0.24952.0157-21.7405-27.3709163.3726
1651.0624-0.6746-0.69321.4331-0.58251.54680.1149-0.42020.38180.48340.0546-0.6662-0.3260.4254-0.08811.4188-0.0658-0.00211.4403-0.02931.054411.7862-2.2325182.1016
1660.00020.03050.03790.47820.61210.7768-0.0074-0.50660.60080.51630.2341-0.0375-0.5596-0.0392-0.14781.06120.11830.10730.7945-0.33251.0654-4.783588.8131100.6392
1670.21890.21310.19030.61620.00830.17520.02840.2205-0.2061-0.35930.01050.01320.2251-0.0142-0.02840.5912-0.1193-0.04430.5465-0.23160.541523.7042-66.636216.8149
1680.23110.0349-0.05950.1967-0.08570.42210.0876-0.29260.06840.2087-0.0403-0.0704-0.10450.1539-00.4744-0.1396-0.05290.6346-0.05120.31163.12197.8045126.2371
1690.25280.0379-0.05350.4374-0.04450.22070.01420.10810.1386-0.1146-0.04980.2343-0.1737-0.25570.02570.50940.2132-0.00020.7291-0.06630.6212-54.236463.328362.642
1701.40070.9896-0.95663.81121.76172.6315-0.17880.41290.472-0.5574-0.09730.6-0.5777-0.51730.1721.01060.3794-0.21471.08760.1460.9573-49.4023101.943134.3288
1712.0348-0.0810.71973.94620.59270.35160.0479-0.29260.19630.3174-0.0220.2584-0.2198-0.24890.00661.50980.3874-0.03891.4765-0.17851.7599-42.7406127.7074104.0743
1720.71220.2247-0.09640.0729-0.03350.01480.04650.16520.56750.00590.0670.1127-0.5566-0.1708-0.04861.68880.03520.19261.6985-0.23321.8341-59.3479113.3894117.9709
1730.14260.34710.04740.8360.11660.0195-0.1514-0.3595-0.4750.3527-0.12940.47170.4342-0.29610.15822.361-0.1123-0.15932.3328-0.12932.2081-112.380614.768227.4793
1740.4007-0.00020.01720.4101-0.2860.19740.03710.2848-0.0036-0.31180.07560.15120.0257-0.3762-0.13290.78230.2375-0.20491.38990.00410.8678-83.654948.686424.5019
1750.49370.0677-0.06150.64130.01130.33970.103-0.1256-0.09070.3246-0.16960.190.0778-0.25930.0570.4836-0.15430.15010.6776-0.17160.5395-60.515410.5082106.0018
1760.47050.3704-0.13150.67150.51671.03960.0810.28330.2422-0.29910.2290.436-0.411-0.6567-0.19021.26610.33130.04181.7846-0.43031.8718-109.110558.074896.5527
1770.0037-0.00740.00970.0096-0.01610.016-0.1718-0.0024-0.0173-0.1845-0.05330.61680.0421-0.4650.1592.1450.0860.09782.2708-0.16492.0213-99.914979.5013108.7981
1780.134-0.088-0.3230.556-0.28171.23240.0270.01880.16680.14110.04590.1999-0.34840.1852-0.00250.59140.23270.19661.0045-0.19671.016-80.079856.447878.5594
1790.13040.5868-0.18362.453-0.78990.24670.19840.09440.20810.0751-0.11420.1754-0.4049-0.1016-0.06081.2357-0.06580.3891.226-0.4271.317-63.813378.6979126.776
1800.10750.1378-0.01270.32990.26750.24310.00920.1962-0.12540.1565-0.07860.05230.1386-0.28570.00750.5198-0.31710.06780.9715-0.39580.8963-74.4564-47.584856.1464
1810.26730.2659-0.01350.58490.06880.21810.07060.1014-0.07040.0158-0.0920.0173-0.0379-0.15050.05760.35550.0720.05240.5606-0.10750.519-35.706924.635274.3344
1820.21180.01730.00490.1416-0.02220.14840.01220.1454-0.0011-0.05920.02720.01560.0364-0.0153-0.0380.33860.0001-0.04560.25990.0250.2476139.10012.8578220.1629
1831.8867-0.0801-0.13270.00150.00580.01330.0244-0.1652-0.45860.23190.194-1.04960.21061.0611-0.12361.18240.2917-0.25761.2920.04381.4308182.2887-36.8244297.9504
1840.23120.12010.40460.730.11960.68530.16640.24720.02920.1081-0.3087-0.30050.12220.08620.21331.1102-0.17940.00780.65640.11420.5995153.929621.5133329.0757
1850.54890.0919-0.23080.2367-0.01060.0989-0.17020.82990.4293-0.69120.08190.0319-0.46820.47970.10351.349-0.09980.07881.42590.07810.8145169.2371-7.6292145.2631
1861.0112-0.4065-0.85351.70350.01020.81390.1517-0.13170.00230.1883-0.0215-0.08840.2569-0.0722-0.05590.6919-0.07650.08330.60670.06890.6349204.6533-10.9566248.3189
1870.0037-0.00730.00480.0104-0.00990.007-0.0237-0.1024-0.74420.0270.0595-0.35360.7470.4911-0.01392.15470.1995-0.06112.0838-0.02732.0845219.822-35.4698150.9354
1881.48630.5033-0.16320.77180.70790.98580.0360.58460.3684-0.66280.03940.5795-0.232-0.362-0.06141.565-0.00460.02031.4266-0.33380.9677191.2009-13.6541123.9551
1890.0630.005-0.04340.009-0.01440.0333-0.0410.31730.3252-0.36960.1215-0.0888-0.43720.146-0.05640.9826-0.13540.20420.77870.54881.1347186.370288.0875195.7016
1900.1862-0.16720.18120.2148-0.1760.0859-0.0872-0.1381-0.15360.40680.17180.09390.0346-0.1056-0.09290.6470.0727-0.06610.28990.08810.418142.1109-56.9009289.859
1910.20260.0068-0.02290.12320.01880.3230.00780.32980.0274-0.23250.08510.03960.0287-0.0293-0.03690.6211-0.0832-0.09090.73960.03070.2943127.68930.9763165.1021
1920.3302-0.1140.01180.6339-0.00560.2039-0.0328-0.00470.24080.1665-0.065-0.3159-0.1650.07650.0860.5356-0.1061-0.11070.33450.08520.6857226.180668.6992247.6363
1931.5852-0.8734-1.23522.5752-0.85482.08780.0235-0.48150.46780.5044-0.1539-0.4465-0.29910.55030.02061.2085-0.1511-0.3480.4856-0.18460.8891213.8543108.9433272.1104
1940.64160.46270.11161.8461-0.30910.11890.14410.31830.399-0.26670.0329-0.2463-0.43650.2465-0.13221.8245-0.1577-0.16631.18650.25341.6832221.194131.3258201.3147
1950.01650.02750.01690.04660.0350.0298-0.0349-0.08160.4054-0.1304-0.0283-0.1081-0.41930.03460.01482.45190.1260.08462.51330.10912.532241.2064117.8483191.1054
1960.6081-1.04260.23251.9986-0.13060.3939-0.14050.2546-0.3028-0.3341-0.2071-0.49880.45270.52530.18891.95550.1409-0.56531.7476-0.11261.675277.374425.2172296.6117
1970.3082-0.22960.11060.42380.10820.1725-0.0768-0.24110.15740.161-0.01910.0143-0.11560.16540.04371.0365-0.1183-0.43640.8075-0.03650.957247.147257.6117291.6611
1980.39780.00510.09130.59570.16830.21510.05160.2084-0.0197-0.1265-0.1338-0.3087-0.00460.13120.05440.34990.02820.14410.49790.1460.6321243.144114.7218209.4221
1990.3642-0.07880.64830.23-0.38851.5073-0.0268-0.55360.10310.4590.1435-0.3455-0.23570.63980.00081.65-0.33410.01211.98160.28512.0572290.235959.252235.5464
2000.5070.20270.01770.8047-0.07370.00820.06780.3690.1258-0.31410.0615-0.1189-0.11190.1319-0.04472.1944-0.2321-0.00611.9620.07791.9515271.845689.3584186.5157
2010.4172-0.0736-0.55740.52990.25240.86510.11160.0420.10990.0225-0.1089-0.1354-0.3213-0.1728-0.00210.466-0.1656-0.05870.53510.27961.0734254.925462.6943238.0156
2021.0094-0.709-0.25850.7660.12340.55750.0331-0.03040.21460.05880.0255-0.1694-0.2844-0.14940.04821.2195-0.0930.17541.19570.49211.1282248.744383.187187.0939
203-0.2289-0.05650.1920.9904-0.34950.3128-0.0548-0.0354-0.03420.40710.17950.07820.0587-0.03870.00230.68020.1590.23910.52190.29490.8119248.1015-40.4454263.7378
2040.41720.0518-0.08390.32840.01590.35370.03860.02790.0990.0218-0.10050.0747-0.18110.00380.08660.375-0.0729-0.04730.36580.06720.4222207.995347.8936234.5147
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth seq-IDAuth asym-ID
1X-RAY DIFFRACTION1segid S0A0
2X-RAY DIFFRACTION2segid S1A0
3X-RAY DIFFRACTION3segid S2A0
4X-RAY DIFFRACTION4segid S3A0
5X-RAY DIFFRACTION5segid S4A0
6X-RAY DIFFRACTION6segid S5A0
7X-RAY DIFFRACTION7segid S6A0
8X-RAY DIFFRACTION8segid S7A0
9X-RAY DIFFRACTION9segid S8A0
10X-RAY DIFFRACTION10segid S9A0
11X-RAY DIFFRACTION11segid S10A1 - 960
12X-RAY DIFFRACTION12segid S11A2 - 1561
13X-RAY DIFFRACTION13segid S12A20 - 1432
14X-RAY DIFFRACTION14segid S13A2 - 1513
15X-RAY DIFFRACTION15segid S14A11 - 1374
16X-RAY DIFFRACTION16segid S15A8 - 1315
17X-RAY DIFFRACTION17segid S16A3 - 1436
18X-RAY DIFFRACTION18segid S17A2 - 1267
19X-RAY DIFFRACTION19segid S18A2 - 1468
20X-RAY DIFFRACTION20segid S19A2 - 1449
21X-RAY DIFFRACTION21segid S20A15 - 1210
22X-RAY DIFFRACTION22segid S21A1 - 871
23X-RAY DIFFRACTION23segid S22A2 - 1302
24X-RAY DIFFRACTION24segid S23A2 - 1453
25X-RAY DIFFRACTION25segid S24A2 - 1354
26X-RAY DIFFRACTION26segid S25A36 - 1055
27X-RAY DIFFRACTION27segid S26A2 - 5006
28X-RAY DIFFRACTION28segid S27A2 - 1017
29X-RAY DIFFRACTION29segid S28A5 - 678
30X-RAY DIFFRACTION30segid S29A4 - 999
31X-RAY DIFFRACTION31segid S30A2 - 610
32X-RAY DIFFRACTION32segid S31A82 - 5011
33X-RAY DIFFRACTION33segid SRKA2 - 319R
34X-RAY DIFFRACTION34segid STMA9 - 176M
35X-RAY DIFFRACTION35segid L2A0
36X-RAY DIFFRACTION36segid L3A0
37X-RAY DIFFRACTION37segid L4A0
38X-RAY DIFFRACTION38segid L5A0
39X-RAY DIFFRACTION39segid L6A0
40X-RAY DIFFRACTION40segid L7A0
41X-RAY DIFFRACTION41segid L8A0
42X-RAY DIFFRACTION42segid L9A0
43X-RAY DIFFRACTION43segid L10A2 - 2210
44X-RAY DIFFRACTION44segid L11A6 - 1741
45X-RAY DIFFRACTION45segid L13A2 - 1943
46X-RAY DIFFRACTION46segid L14A3 - 1384
47X-RAY DIFFRACTION47segid L15A2 - 2045
48X-RAY DIFFRACTION48segid L16A3 - 1996
49X-RAY DIFFRACTION49segid L17A2 - 1847
50X-RAY DIFFRACTION50segid L18A2 - 1868
51X-RAY DIFFRACTION51segid L19A and resid 2:732 - 739
52X-RAY DIFFRACTION52segid L19A and resid 74:12674 - 1269
53X-RAY DIFFRACTION53segid L19A and resid 127:183127 - 1839
54X-RAY DIFFRACTION54segid L20A1 - 1720
55X-RAY DIFFRACTION55segid L21A2 - 1601
56X-RAY DIFFRACTION56segid L22A9 - 1082
57X-RAY DIFFRACTION57segid L23A2 - 1373
58X-RAY DIFFRACTION58segid L24A1 - 984
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78X-RAY DIFFRACTION78segid S0B0
79X-RAY DIFFRACTION79segid S1B0
80X-RAY DIFFRACTION80segid S2B0
81X-RAY DIFFRACTION81segid S3B0
82X-RAY DIFFRACTION82segid S4B0
83X-RAY DIFFRACTION83segid S5B0
84X-RAY DIFFRACTION84segid S6B0
85X-RAY DIFFRACTION85segid S7B0
86X-RAY DIFFRACTION86segid S8B0
87X-RAY DIFFRACTION87segid S9B0
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93X-RAY DIFFRACTION93segid S15B4 - 1385
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100X-RAY DIFFRACTION100segid S22B2 - 1302
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102X-RAY DIFFRACTION102segid S24B2 - 1354
103X-RAY DIFFRACTION103segid S25B37 - 1055
104X-RAY DIFFRACTION104segid S26B2 - 5006
105X-RAY DIFFRACTION105segid S27B2 - 17
106X-RAY DIFFRACTION106segid S28B5 - 678
107X-RAY DIFFRACTION107segid S29B4 - 999
108X-RAY DIFFRACTION108segid S30B2 - 630
109X-RAY DIFFRACTION109segid S31B77 - 5011
110X-RAY DIFFRACTION110segid SRKB2 - 319R
111X-RAY DIFFRACTION111segid STMB23 - 174M
112X-RAY DIFFRACTION112segid L2B0
113X-RAY DIFFRACTION113segid L3B0
114X-RAY DIFFRACTION114segid L4B0
115X-RAY DIFFRACTION115segid L5B0
116X-RAY DIFFRACTION116segid L6B0
117X-RAY DIFFRACTION117segid L7B0
118X-RAY DIFFRACTION118segid L8B0
119X-RAY DIFFRACTION119segid L9B0
120X-RAY DIFFRACTION120segid L10B2 - 2210
121X-RAY DIFFRACTION121segid L11B6 - 1741
122X-RAY DIFFRACTION122segid L12B9 - 1632
123X-RAY DIFFRACTION123segid L13B2 - 1953
124X-RAY DIFFRACTION124segid L14B2 - 1384
125X-RAY DIFFRACTION125segid L15B2 - 2045
126X-RAY DIFFRACTION126segid L16B3 - 1996
127X-RAY DIFFRACTION127segid L17B2 - 1567
128X-RAY DIFFRACTION128segid L18B2 - 1868
129X-RAY DIFFRACTION129segid L19B and resid 2:732 - 739
130X-RAY DIFFRACTION130segid L19B and resid 74:12674 - 1269
131X-RAY DIFFRACTION131segid L19B and resid 127:183127 - 1839
132X-RAY DIFFRACTION132segid L20B1 - 1720
133X-RAY DIFFRACTION133segid L21B2 - 1601
134X-RAY DIFFRACTION134segid L22B11 - 1082
135X-RAY DIFFRACTION135segid L23B2 - 1373
136X-RAY DIFFRACTION136segid L24B1 - 1354
137X-RAY DIFFRACTION137segid L25B23 - 1425
138X-RAY DIFFRACTION138segid L26B2 - 1276
139X-RAY DIFFRACTION139segid L27B2 - 1367
140X-RAY DIFFRACTION140segid L28B2 - 1498
141X-RAY DIFFRACTION141segid L29B2 - 599
142X-RAY DIFFRACTION142segid L30B6 - 1050
143X-RAY DIFFRACTION143segid L31B4 - 1121
144X-RAY DIFFRACTION144segid L32B2 - 1282
145X-RAY DIFFRACTION145segid L33B2 - 1073
146X-RAY DIFFRACTION146segid L34B2 - 1134
147X-RAY DIFFRACTION147segid L35B2 - 1205
148X-RAY DIFFRACTION148segid L36B2 - 1006
149X-RAY DIFFRACTION149segid L37B2 - 5017
150X-RAY DIFFRACTION150segid L38B2 - 788
151X-RAY DIFFRACTION151segid L39B2 - 519
152X-RAY DIFFRACTION152segid L40B77 - 5000
153X-RAY DIFFRACTION153segid L41B1 - 251
154X-RAY DIFFRACTION154segid L42B2 - 5012
155X-RAY DIFFRACTION155segid L43B2 - 5013
156X-RAY DIFFRACTION156segid LP0B3 - 2210
157X-RAY DIFFRACTION157segid LP1B1 - 471
158X-RAY DIFFRACTION158segid LP2B1 - 462
159X-RAY DIFFRACTION159(segid 25SA and (not resid 1011:1039) and (not resid 1219:1288) and (not resid 1552:1583) and (not resid 2250:2266) and (not resid 2455:2502) and (not resid 2532:2547) and (not resid 2563:2578) and (not resid 3341:3364))0
160X-RAY DIFFRACTION160(segid 25SA and resid 1011:1039)1011 - 10391
161X-RAY DIFFRACTION161(segid 25SA and resid 1219:1288)1219 - 12881
162X-RAY DIFFRACTION162(segid 25SA and resid 1552:1583)1552 - 15831
163X-RAY DIFFRACTION163(segid 25SA and resid 2250:2266)2250 - 22661
164X-RAY DIFFRACTION164(segid 25SA and resid 2532:2547)2532 - 25471
165X-RAY DIFFRACTION165(segid 25SA and resid 2563:2578)2563 - 25781
166X-RAY DIFFRACTION166(segid 25SA and resid 3341:3364)3341 - 33641
167X-RAY DIFFRACTION167segid 5SA0
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171X-RAY DIFFRACTION171(segid 18SA and resid 185:200)185 - 2002
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173X-RAY DIFFRACTION173(segid 18SA and resid 480:509)480 - 5092
174X-RAY DIFFRACTION174(segid 18SA and resid 510:545)510 - 5452
175X-RAY DIFFRACTION175((segid 18SA and resid 603:1106) and (not resid 640:694) and (not resid 698:742) and (not resid 743:765) and (not resid 810:855))0
176X-RAY DIFFRACTION176(segid 18SA and resid 640:694)640 - 6942
177X-RAY DIFFRACTION177(segid 18SA and resid 698:742)698 - 7422
178X-RAY DIFFRACTION178(segid 18SA and resid 743:765)743 - 7652
179X-RAY DIFFRACTION179(segid 18SA and resid 810:855)810 - 8552
180X-RAY DIFFRACTION180(segid 18SA and resid 1107:1635)1107 - 16352
181X-RAY DIFFRACTION181(segid 18SA and resid 1636:1799)1636 - 17992
182X-RAY DIFFRACTION182(segid 25SB and (not resid 1011:1039) and (not resid 1219:1288) and (not resid 1552:1583) and (not resid 2250:2266) and (not resid 2455:2502) and (not resid 2532:2547) and (not resid 2563:2578) and (not resid 3341:3364))0
183X-RAY DIFFRACTION183(segid 25SB and resid 1011:1039)1011 - 10395
184X-RAY DIFFRACTION184(segid 25SB and resid 1219:1288)1219 - 12885
185X-RAY DIFFRACTION185(segid 25SB and resid 1552:1583)1552 - 15835
186X-RAY DIFFRACTION186(segid 25SB and resid 2250:2266)2250 - 22665
187X-RAY DIFFRACTION187(segid 25SB and resid 2532:2547)2532 - 25475
188X-RAY DIFFRACTION188(segid 25SB and resid 2563:2578)2563 - 25785
189X-RAY DIFFRACTION189(segid 25SB and resid 3341:3364)3341 - 33645
190X-RAY DIFFRACTION190segid 5SB0
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192X-RAY DIFFRACTION192((segid 18SB and resid 1:602) and (not resid 64:86) and (not resid 185:200) and (not resid 219:237) and (not resid 480:509) and (not resid 510:545))0
193X-RAY DIFFRACTION193(segid 18SB and resid 64:86)64 - 866
194X-RAY DIFFRACTION194(segid 18SB and resid 185:200)185 - 2006
195X-RAY DIFFRACTION195(segid 18SB and resid 219:237)219 - 2376
196X-RAY DIFFRACTION196(segid 18SB and resid 480:509)480 - 5096
197X-RAY DIFFRACTION197(segid 18SB and resid 510:545)510 - 5456
198X-RAY DIFFRACTION198((segid 18SB and resid 603:1106) and (not resid 640:694) and (not resid 698:742) and (not resid 743:765) and (not resid 810:855))0
199X-RAY DIFFRACTION199(segid 18SB and resid 640:694)640 - 6946
200X-RAY DIFFRACTION200(segid 18SB and resid 698:742)698 - 7426
201X-RAY DIFFRACTION201(segid 18SB and resid 743:765)743 - 7656
202X-RAY DIFFRACTION202(segid 18SB and resid 810:855)810 - 8556
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204X-RAY DIFFRACTION204(segid 18SB and resid 1636:1799)1636 - 17996

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る