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- SASDFB9: Poly-adenosine rA30 in 100 mM NaCl (Poly-adenosine, rA30) -

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Basic information

Entry
Database: SASBDB / ID: SASDFB9
SamplePoly-adenosine rA30 in 100 mM NaCl
  • Poly-adenosine (RNA), rA30
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #3337
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3338
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3339
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3340
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3341
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3342
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3343
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3344
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3345
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3346
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3347
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3348
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3349
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3350
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3351
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3352
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3353
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3354
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3355
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)
Model #3356
Type: atomic / Chi-square value: 0.946729 / P-value: 0.877594
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Poly-adenosine rA30 in 100 mM NaCl / Specimen concentration: 0.40-1.20
BufferName: 1 mM Na-MOPS, 100 mM NaCl, 20 µM EDTA / pH: 7
Entity #1769Name: rA30 / Type: RNA / Description: Poly-adenosine / Formula weight: 9.894 / Num. of mol.: 1
Sequence:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.11 Å / Dist. spec. to detc.: 2.04 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Poly-adenosine rA30 in 100 mM NaCl / Measurement date: Oct 25, 2015 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 10 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.01 0.27
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 235 /
MinMax
Q0.025 0.259
P(R) point1 235
R0 107.2
Result
Type of curve: extrapolated /
ExperimentalPorod
MW14 kDa-
Volume-14 nm3

P(R)GuinierGuinier error
Forward scattering, I033.83 33.27 0.38
Radius of gyration, Rg2.61 nm2.44 nm0.03

MinMax
D-10.72
Guinier point10 44

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