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- SASDEE9: TraI_2_C domain of TraI (TraI_2_C) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEE9
SampleTraI_2_C domain of TraI
  • TraI_2_C domain of TraI (protein), TraI_2_C, Neisseria gonorrhoeae
Function / homologyUncharacterised domain, helicase/relaxase, putative / Putative helicase / Putative conjugal transfer nickase/helicase TraI, C-terminal / Putative conjugal transfer nickase/helicase TraI C-term / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / TraI
Function and homology information
Biological speciesNeisseria gonorrhoeae (bacteria)
CitationDate: 2019 Jul 5
Title: DNA processing by the MOBH family relaxase TraI encoded within the gonococcal genetic island
Authors: Heilers J / Reiners J / Heller E / Golzer A / Smits S
Contact author
  • Jens Reiners (Heinrich Heine University Düsseldorf, Düsseldorf, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2740
Type: dummy / Radius of dummy atoms: 1.90 A / Chi-square value: 0.80
Search similar-shape structures of this assembly by Omokage search (details)
Model #2743
Type: atomic / Chi-square value: 4.165
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: TraI_2_C domain of TraI / Specimen concentration: 1.00-4.57
BufferName: 50 mM TRIS-HCl 100 mM NaCl / pH: 8
Entity #1430Name: TraI_2_C / Type: protein / Description: TraI_2_C domain of TraI / Formula weight: 20.813 / Num. of mol.: 1 / Source: Neisseria gonorrhoeae / References: UniProt: Q5EPC7
Sequence:
MSASGVKNMA ELEAIVSERN LKKQSETEST EIVEDSVKAK HMEARDRGMQ FLRWLADGLG DGSIAVNRSG ATVHFIEQGM LLVTPAVFRD YAGGVFNKSD TESLGPLTQK GFEALRLHAR TKKSSLHRVL TTNGSNRRLF YCYLIPEHNI KHIIQPGSRP QNNTDIKLDE SDLLVMEQKA LEVLFQ

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: TraI_2_C domain of TraI / Measurement date: Jul 11, 2018 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
MinMax
Q0.0586 4.4208
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 701 /
MinMax
Q0.275958 3.58424
P(R) point1 701
R0 6.46
Result
Type of curve: merged
Comments: Please note: The protein contains unstructured regions that impart a level of flexibility to the overall structure in solution. As a consequence, the conformational state(s) sampled by the ...Comments: Please note: The protein contains unstructured regions that impart a level of flexibility to the overall structure in solution. As a consequence, the conformational state(s) sampled by the protein differs from - and cannot be captured by - the single predicted PHYRE2 atomistic model/representation displayed in this entry (as evidenced by the poor fit of the model to the SAXS data; bottom).
ExperimentalStandardPorod
MW20.38 kDa17.76 kDa25.41 kDa
Volume--40.06 nm3

P(R)GuinierGuinier error
Forward scattering, I017.57 17.94 0.03
Radius of gyration, Rg2.183 nm2.23 nm0.04

MinMax
D-6.46
Guinier point47 111

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