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- SASDB29: Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 200 mM NaCl -

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Basic information

Entry
Database: SASBDB / ID: SASDB29
SampleSingle stranded poly-deoxyadenosine DNA (30mer, dA30) in 200 mM NaCl
  • Poly-deoxyadenosine (30mer) (DNA), dA30
CitationDate: 2017 Feb 25
Title: The impact of base stacking on the conformations and electrostatics of single-stranded DNA
Authors: Plumridge A / Meisburger S / Andresen K
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1032
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 1 / Chi-square value: 1.014049
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Model #1033
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 2 / Chi-square value: 1.014049
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Model #1034
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 3 / Chi-square value: 1.014049
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Model #1035
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 4 / Chi-square value: 1.014049
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Model #1036
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 5 / Chi-square value: 1.014049
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Model #1037
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 6 / Chi-square value: 1.014049
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Model #1038
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 7 / Chi-square value: 1.014049
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Model #1039
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 8 / Chi-square value: 1.014049
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Model #1040
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 9 / Chi-square value: 1.014049
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Model #1041
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 10 / Chi-square value: 1.014049
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Model #1042
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 11 / Chi-square value: 1.014049
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Model #1043
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 12 / Chi-square value: 1.014049
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Model #1044
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 13 / Chi-square value: 1.014049
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Model #1045
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 14 / Chi-square value: 1.014049
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Model #1046
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 15 / Chi-square value: 1.014049
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Model #1047
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 16 / Chi-square value: 1.014049
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Model #1048
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 17 / Chi-square value: 1.014049
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Model #1049
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 18 / Chi-square value: 1.014049
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Model #1050
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 19 / Chi-square value: 1.014049
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Model #1051
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 20 / Chi-square value: 1.014049
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Sample

SampleName: Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 200 mM NaCl
Specimen concentration: 0.50-1.80
BufferName: 1mM Na MOPS, 200mM NaCl / pH: 7
Entity #401Name: dA30 / Type: DNA / Description: Poly-deoxyadenosine (30mer) / Formula weight: 9.3 / Num. of mol.: 1
Sequence:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 1.8 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Single stranded poly-deoxyadenosine DNA (30mer, dA / Measurement date: Apr 1, 2015 / Storage temperature: 4 °C / Cell temperature: 22 °C / Exposure time: 10 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.01 0.29
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 267 /
MinMax
Q0.015 0.281
P(R) point1 267
R0 94.17
Result
Type of curve: extrapolated /
ExperimentalPorod
MW9 kDa-
Volume-14.5 nm3

GuinierGuinier errorP(R)
Forward scattering, I048.78 0.4 -
Radius of gyration, Rg2.68 nm0.04 2.7 nm

MinMax
D-9.5
Guinier point6 37

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