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Yorodumi- PDB-8hpj: Crystal structure of the bacterial oxalate transporter OxlT in a ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8hpj | ||||||
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Title | Crystal structure of the bacterial oxalate transporter OxlT in a ligand-free outward-facing form | ||||||
Components |
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Keywords | TRANSPORT PROTEIN/IMMUNE SYSTEM / Transporter / TRANSPORT PROTEIN / TRANSPORT PROTEIN-IMMUNE SYSTEM complex | ||||||
Function / homology | Function and homology information oxalate transmembrane transporter activity / antiporter activity / plasma membrane Similarity search - Function | ||||||
Biological species | Oxalobacter formigenes (bacteria) Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.3 Å | ||||||
Authors | Shimamura, T. / Hirai, T. / Yamashita, A. | ||||||
Funding support | Japan, 1items
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Citation | Journal: Nat Commun / Year: 2023 Title: Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Authors: Jaunet-Lahary, T. / Shimamura, T. / Hayashi, M. / Nomura, N. / Hirasawa, K. / Shimizu, T. / Yamashita, M. / Tsutsumi, N. / Suehiro, Y. / Kojima, K. / Sudo, Y. / Tamura, T. / Iwanari, H. / ...Authors: Jaunet-Lahary, T. / Shimamura, T. / Hayashi, M. / Nomura, N. / Hirasawa, K. / Shimizu, T. / Yamashita, M. / Tsutsumi, N. / Suehiro, Y. / Kojima, K. / Sudo, Y. / Tamura, T. / Iwanari, H. / Hamakubo, T. / Iwata, S. / Okazaki, K.I. / Hirai, T. / Yamashita, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8hpj.cif.gz | 580.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8hpj.ent.gz | 402.8 KB | Display | PDB format |
PDBx/mmJSON format | 8hpj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hp/8hpj ftp://data.pdbj.org/pub/pdb/validation_reports/hp/8hpj | HTTPS FTP |
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-Related structure data
Related structure data | 8hpkSC 5b3nS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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