[English] 日本語
![](img/lk-miru.gif)
- PDB-8cqn: Crystal structure of Borrelia burgdorferi paralogous family 12 ou... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 8cqn | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBK01 | ||||||
![]() | Lipoprotein, putative![]() | ||||||
![]() | ![]() | ||||||
Function / homology | Prokaryotic membrane lipoprotein lipid attachment site profile. / ![]() ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Brangulis, K. / Drunka, L. / Matisone, S. / Akopjana, I. / Tars, K. | ||||||
Funding support | ![]()
| ||||||
![]() | ![]() Title: Crystal structure of Borrelia burgdorferi outer surface protein BBK01 Authors: Brangulis, K. / Drunka, L. / Matisone, S. / Akopjana, I. / Tars, K. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 88 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 66.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 8cqoC C: citing same article ( |
---|---|
Similar structure data | Similarity search - Function & homology ![]() |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | ![]() Mass: 31645.965 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: The first 4 residues (GAMG) are remnants from the expression tag. Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.94 Å3/Da / Density % sol: 36.55 % |
---|---|
Crystal grow![]() | Temperature: 294 K / Method: vapor diffusion, sitting drop / pH: 9 / Details: 0.1M Bicine pH 9.0 6% PEG 20 000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Dec 9, 2022 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.7→46.14 Å / Num. obs: 13352 / % possible obs: 98.6 % / Redundancy: 3.4 % / Rmerge(I) obs: 0.053 / Net I/σ(I): 12.3 |
Reflection shell | Resolution: 2.7→2.83 Å / Redundancy: 3.4 % / Rmerge(I) obs: 0.242 / Mean I/σ(I) obs: 4 / Num. unique obs: 1771 / % possible all: 98.7 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure![]() ![]() Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 225.37 Å2 / Biso mean: 59.479 Å2 / Biso min: 23.07 Å2
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.7→46.14 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 2.7→2.77 Å / Rfactor Rfree error: 0 / Total num. of bins used: 20
|