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Yorodumi- PDB-8chh: SH3 domain solved by the exact solid-state method from the Bruker... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8chh | |||||||||
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Title | SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction method for spin-diffusion with PDB 2NUZ as reference | |||||||||
Components | Spectrin alpha chain, non-erythrocytic 1 | |||||||||
Keywords | PEPTIDE BINDING PROTEIN / solid-state NMR spectroscopy / structure elucidation / integrated structural biology / protein dynamics | |||||||||
Function / homology | Function and homology information actin filament capping / costamere / cortical actin cytoskeleton / cell projection / actin filament binding / cell junction / actin cytoskeleton organization / calmodulin binding / calcium ion binding / plasma membrane Similarity search - Function | |||||||||
Biological species | Gallus gallus (chicken) | |||||||||
Method | SOLID-STATE NMR / simulated annealing | |||||||||
Authors | Soeldner, B. | |||||||||
Funding support | Germany, 2items
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Citation | Journal: J Phys Chem Lett / Year: 2023 Title: Integrated Assessment of the Structure and Dynamics of Solid Proteins. Authors: Soldner, B. / Grohe, K. / Neidig, P. / Auch, J. / Blach, S. / Klein, A. / Vasa, S.K. / Schafer, L.V. / Linser, R. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8chh.cif.gz | 221.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8chh.ent.gz | 188.9 KB | Display | PDB format |
PDBx/mmJSON format | 8chh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ch/8chh ftp://data.pdbj.org/pub/pdb/validation_reports/ch/8chh | HTTPS FTP |
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-Related structure data
Related structure data | 8cf4C 8chgC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7229.244 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Gallus gallus (chicken) / Gene: SPTAN1, SPTA2 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: P07751 |
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-Experimental details
-Experiment
Experiment | Method: SOLID-STATE NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solid Contents: 1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin, 100% H2O Label: 1H_13C_15N_labeled_SH3 / Solvent system: 100% H2O |
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Sample | Conc.: 1 na / Component: SH3 of chicken alpha-spectrin / Isotopic labeling: [U-100% 13C; U-100% 15N] |
Sample conditions | Ionic strength: 0 M / Label: 1H_13C_15N_labeled_SH3 / pH: 7 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: Water refinement of the 10 lowest energy structures | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |