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Open data
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Basic information
Entry | Database: PDB / ID: 7zzq | |||||||||
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Title | BcsH-BcsD 'beads-on-a-string' filament, local refine | |||||||||
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Function / homology | Cellulose-complementing protein / Cellulose-complementing protein A / Cellulose synthase operon protein D, bacterial / ![]() ![]() ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Krasteva, P.V. / Abidi, W. / Decossas, M. | |||||||||
Funding support | European Union, ![]()
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![]() | ![]() Title: Bacterial crystalline cellulose secretion via a supramolecular BcsHD scaffold. Authors: Wiem Abidi / Marion Decossas / Lucía Torres-Sánchez / Lucie Puygrenier / Sylvie Létoffé / Jean-Marc Ghigo / Petya V Krasteva / ![]() Abstract: Cellulose, the most abundant biopolymer on Earth, is not only the predominant constituent of plants but also a key extracellular polysaccharide in the biofilms of many bacterial species. Depending on ...Cellulose, the most abundant biopolymer on Earth, is not only the predominant constituent of plants but also a key extracellular polysaccharide in the biofilms of many bacterial species. Depending on the producers, chemical modifications, and three-dimensional assemblies, bacterial cellulose (BC) can present diverse degrees of crystallinity. Highly ordered, or crystalline, cellulose presents great economical relevance due to its ever-growing number of biotechnological applications. Even if some acetic acid bacteria have long been identified as BC superproducers, the molecular mechanisms determining the secretion of crystalline versus amorphous cellulose remain largely unknown. Here, we present structural and mechanistic insights into the role of the accessory subunits BcsH (CcpAx) and BcsD (CesD) that determine crystalline BC secretion in the lineage. We show that oligomeric BcsH drives the assembly of BcsD into a supramolecular cytoskeletal scaffold that likely stabilizes the cellulose-extruding synthase nanoarrays through an unexpected inside-out mechanism for secretion system assembly. | |||||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 485 KB | Display | ![]() |
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PDB format | ![]() | 396.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 15039MC ![]() 7zzyC M: map data used to model this data C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Components
#1: Protein | Mass: 17532.963 Da / Num. of mol.: 18 Source method: isolated from a genetically manipulated source Details: BcsD from Gluconacetobacter hansenii ATCC 23769 expressed recombinantly in BL21 Star DE3 cells Source: (gene. exp.) ![]() Gene: acsD, GXY_04292 / Plasmid: pRSFDuet1-BcsD / Production host: ![]() ![]() ![]() #2: Protein | Mass: 9919.921 Da / Num. of mol.: 12 Source method: isolated from a genetically manipulated source Details: BcsH C-terminal domain from G. hansenii expressed from a pProEx-Htb vector with a HRV3c-cleavable hexahistidine tag Source: (gene. exp.) ![]() Gene: GXY_04267 / Plasmid: pProEx-Htb / Details (production host): pProEx-BcsH / Production host: ![]() ![]() ![]() #3: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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EM experiment | Aggregation state: FILAMENT / 3D reconstruction method: ![]() |
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Sample preparation
Component | Name: BcsHD 'beads-on-a-string' cis-filaments / Type: COMPLEX Details: G. hansenii BcsHD complex purified after the co-expression of hexahistidine tagged BcsH C-terminal domain and full-length BcsD. IMAC purification via BcsH, tag and linker removed during purification Entity ID: #1-#2 / Source: RECOMBINANT |
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Source (natural) | Organism: ![]() |
Source (recombinant) | Organism: ![]() ![]() ![]() ![]() |
Buffer solution | pH: 8 / Details: 20 mM NaCl, 100 mM NaCL |
Specimen | Conc.: 0.5 mg/ml / Embedding applied: NO / Shadowing applied: NO / Staining applied![]() ![]() Details: Filaments of various sizes eluting in the void volume of a Superdex 200 Increase size-exclusion column. |
Specimen support | Grid material: GOLD / Grid mesh size: 300 divisions/in. / Grid type: Quantifoil R1.2/1.3 |
Vitrification![]() | Instrument: FEI VITROBOT MARK IV / Cryogen name: ETHANE / Humidity: 100 % / Chamber temperature: 293 K |
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Electron microscopy imaging
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Microscopy | Model: FEI TITAN KRIOS |
Electron gun | Electron source![]() ![]() |
Electron lens | Mode: BRIGHT FIELD![]() ![]() |
Image recording | Electron dose: 49.9 e/Å2 / Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) |
EM imaging optics | Energyfilter name![]() |
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Processing
Software | Name: PHENIX / Version: 1.20.1_4487: / Classification: refinement | ||||||||||||||||||||||||
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EM software |
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CTF correction![]() | Type: PHASE FLIPPING AND AMPLITUDE CORRECTION | ||||||||||||||||||||||||
Particle selection | Num. of particles selected: 2849271 Details: Autopicked particles using cryoSPARC's template picker function. The templates were generated by 2D classification and class selection on ~3000 manually particles. | ||||||||||||||||||||||||
Symmetry | Point symmetry![]() | ||||||||||||||||||||||||
3D reconstruction![]() | Resolution: 2.6 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 1425195 / Symmetry type: POINT | ||||||||||||||||||||||||
Atomic model building | Protocol: BACKBONE TRACE / Space: REAL Details: Model building with Coot, refinement with Phenix and Namdinator | ||||||||||||||||||||||||
Atomic model building | PDB-ID: 3A8E Pdb chain-ID: A |