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- PDB-7t8s: Light Harvesting complex phycoerythrin PE 566, from the cryptophy... -

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基本情報

登録情報
データベース: PDB / ID: 7t8s
タイトルLight Harvesting complex phycoerythrin PE 566, from the cryptophyte Cryptomonas pyrenoidifera
要素
  • (phycoerythrin alpha- ...) x 2
  • Phycoerythrin beta subunit
キーワードPHOTOSYNTHESIS (光合成) / light harvesting globin fold
機能・相同性
機能・相同性情報


フィコビリソーム / 色素体 / 光合成
類似検索 - 分子機能
Phycobilisome, alpha/beta subunit / Phycobilisome, alpha/beta subunit superfamily / Phycobilisome protein / Globin-like superfamily
類似検索 - ドメイン・相同性
Bilin 618 (single linked) / Bilin 584 (single linked) / Bilin 584 (doubly linked) / PHYCOERYTHROBILIN / Phycoerythrin beta subunit
類似検索 - 構成要素
生物種Cryptomonas pyrenoidifera (真核生物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2 Å
データ登録者Michie, K.A. / Harrop, S.J. / Rathbone, H.W. / Wilk, K.E. / Curmi, P.M.G.
資金援助3件
組織認可番号国
Australian Research Council (ARC)ARC LIEF LE190100165
Australian Research Council (ARC)DP180103964
Other governmentFA2386-17-1-4101
引用ジャーナル: Protein Sci. / 年: 2023
タイトル: Molecular structures reveal the origin of spectral variation in cryptophyte light harvesting antenna proteins.
著者: Michie, K.A. / Harrop, S.J. / Rathbone, H.W. / Wilk, K.E. / Teng, C.Y. / Hoef-Emden, K. / Hiller, R.G. / Green, B.R. / Curmi, P.M.G.
履歴
登録2021年12月17日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02023年2月15日Provider: repository / タイプ: Initial release
改定 1.12023年3月8日Group: Database references / カテゴリ: citation / Item: _citation.journal_volume
改定 1.22023年10月25日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: Phycoerythrin beta subunit
B: phycoerythrin alpha-1 subunit
C: Phycoerythrin beta subunit
D: phycoerythrin alpha-2 subunit
E: Phycoerythrin beta subunit
F: phycoerythrin alpha-1 subunit
G: Phycoerythrin beta subunit
H: phycoerythrin alpha-2 subunit
I: Phycoerythrin beta subunit
J: phycoerythrin alpha-1 subunit
K: Phycoerythrin beta subunit
L: phycoerythrin alpha-2 subunit
M: Phycoerythrin beta subunit
N: phycoerythrin alpha-1 subunit
O: Phycoerythrin beta subunit
P: phycoerythrin alpha-2 subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)232,31657
ポリマ－212,69716
非ポリマー19,61941
水22,4291245
1
A: Phycoerythrin beta subunit
B: phycoerythrin alpha-1 subunit
C: Phycoerythrin beta subunit
D: phycoerythrin alpha-2 subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)58,05614
ポリマ－53,1744
非ポリマー4,88210
水724
タイプ名称対称操作数
identity operation1_555x,y,z1
2
E: Phycoerythrin beta subunit
F: phycoerythrin alpha-1 subunit
G: Phycoerythrin beta subunit
H: phycoerythrin alpha-2 subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)58,14815
ポリマ－53,1744
非ポリマー4,97411
水724
タイプ名称対称操作数
identity operation1_555x,y,z1
3
I: Phycoerythrin beta subunit
J: phycoerythrin alpha-1 subunit
K: Phycoerythrin beta subunit
L: phycoerythrin alpha-2 subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)58,05614
ポリマ－53,1744
非ポリマー4,88210
水724
タイプ名称対称操作数
identity operation1_555x,y,z1
4
M: Phycoerythrin beta subunit
N: phycoerythrin alpha-1 subunit
O: Phycoerythrin beta subunit
P: phycoerythrin alpha-2 subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)58,05614
ポリマ－53,1744
非ポリマー4,88210
水724
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)178.359, 178.359, 173.546
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number92
Space group name H-MP41212
Space group name HallP4abw2nw
Symmetry operation#1: x,y,z
#2: -y+1/2,x+1/2,z+1/4
#3: y+1/2,-x+1/2,z+3/4
#4: x+1/2,-y+1/2,-z+3/4
#5: -x+1/2,y+1/2,-z+1/4
#6: -x,-y,z+1/2
#7: y,x,-z
#8: -y,-x,-z+1/2
Components on special symmetry positions
IDモデル要素
11D-207-

HOH

非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
d_1ens_1(chain "A" and (resid 15 or resid 17 through 45...
d_2ens_1(chain "E" and (resid 15 or resid 17 through 45...
d_3ens_1(chain "G" and (resid 15 or resid 17 through 45...
d_4ens_1(chain "I" and (resid 15 or resid 17 through 45...
d_5ens_1(chain "K" and (resid 15 or resid 17 through 45...
d_6ens_1(chain "M" and (resid 15 or resid 17 through 45...
d_1ens_2(chain "B" and (resid 2 through 22 or resid 24...
d_2ens_2(chain "F" and (resid 2 through 22 or resid 24...
d_3ens_2(chain "J" and (resid 2 through 22 or resid 24...
d_4ens_2(chain "N" and (resid 2 through 22 or resid 24...
d_1ens_3(chain "C" and (resid 15 through 49 or resid 51...
d_2ens_3(chain "O" and (resid 15 through 49 or resid 51...
d_1ens_4(chain "D" and (resid 1 through 25 or resid 27 through 56 or resid 58 through 101))
d_2ens_4(chain "H" and (resid 1 through 25 or resid 27 through 56 or resid 58 through 101))
d_3ens_4(chain "L" and (resid 1 through 25 or resid 27 through 56 or resid 58 through 101))
d_4ens_4(chain "P" and (resid 1 through 25 or resid 27 through 56 or resid 58 through 101))

NCSドメイン領域:
Dom-IDComponent-IDEns-IDBeg label comp-IDEnd label comp-IDLabel asym-IDLabel seq-ID
d_11ens_1ALAALAA8
d_12ens_1ALAILEA10 - 38
d_13ens_1SERALAA40 - 42
d_14ens_1CYSVALA44 - 46
d_15ens_1ASPLEUA48 - 92
d_16ens_1GLYASPA94 - 101
d_17ens_1CYSLEUA103 - 104
d_18ens_1GLYLYSA106 - 108
d_19ens_1THRVALA110 - 125
d_110ens_1ILEASNA127 - 138
d_111ens_1SERALAA146 - 156
d_112ens_1GLUGLYA158 - 171
d_113ens_1PEBPEBB
d_114ens_1CB4CB4C
d_115ens_1DB4DB4D
d_21ens_1ALAALAM9
d_22ens_1ALAILEM11 - 39
d_23ens_1SERALAM41 - 43
d_24ens_1CYSVALM45 - 47
d_25ens_1ASPLEUM49 - 93
d_26ens_1GLYASPM95 - 102
d_27ens_1CYSLEUM104 - 105
d_28ens_1GLYLYSM107 - 109
d_29ens_1THRVALM111 - 126
d_210ens_1ILEASNM128 - 139
d_211ens_1SERALAM147 - 157
d_212ens_1GLUGLYM159 - 172
d_213ens_1PEBPEBN
d_214ens_1CB4CB4O
d_215ens_1DB4DB4P
d_31ens_1ALAALAS1
d_32ens_1ALAILES3 - 31
d_33ens_1SERALAS33 - 35
d_34ens_1CYSVALS37 - 39
d_35ens_1ASPLEUS41 - 85
d_36ens_1GLYASPS87 - 94
d_37ens_1CYSLEUS96 - 97
d_38ens_1GLYLYSS99 - 101
d_39ens_1THRVALS103 - 118
d_310ens_1ILEASNS120 - 131
d_311ens_1SERALAS139 - 149
d_312ens_1GLUGLYS151 - 164
d_313ens_1PEBPEBT
d_314ens_1CB4CB4U
d_315ens_1DB4DB4V
d_41ens_1ALAALAY9
d_42ens_1ALAILEY11 - 39
d_43ens_1SERALAY41 - 43
d_44ens_1CYSVALY45 - 47
d_45ens_1ASPLEUY49 - 93
d_46ens_1GLYASPY95 - 102
d_47ens_1CYSLEUY104 - 105
d_48ens_1GLYLYSY107 - 109
d_49ens_1THRVALY111 - 126
d_410ens_1ILEASNY128 - 139
d_411ens_1SERALAY147 - 157
d_412ens_1GLUGLYY159 - 172
d_413ens_1PEBPEBZ
d_11ens_2PHEHISE2 - 22
d_12ens_2ASNGLYE24 - 72
d_13ens_2TYRGLYE74 - 76
d_14ens_2LYSLYSE78
d_15ens_2CB8CB8F
d_21ens_2PHEHISQ2 - 22
d_22ens_2ASNGLYQ24 - 72
d_23ens_2TYRGLYQ74 - 76
d_24ens_2LYSLYSQ78
d_25ens_2CB8CB8R
d_11ens_3ALAALAG1 - 35
d_12ens_3CYSVALG37 - 39
d_13ens_3ASPLEUG41 - 97
d_14ens_3GLYALAG99 - 149
d_15ens_3GLUGLYG151 - 164
d_16ens_3PEBPEBH
d_17ens_3CB4CB4I
d_18ens_3DB4DB4J
d_11ens_4ALAASPK1 - 25
d_12ens_4GLUALAK27 - 56
d_13ens_4SERLYSK58 - 70
d_14ens_4CB8CB8L
d_21ens_4ALAASPW1 - 25
d_22ens_4GLUALAW27 - 56
d_23ens_4SERLYSW58 - 70
d_24ens_4CB8CB8X

NCSアンサンブル:
ID
ens_1
ens_2
ens_3
ens_4

NCS oper:
IDCodeMatrixベクター
1given(0.0272106806044, 0.00304734860607, 0.99962507598), (0.0019855824364, 0.999993215892, -0.00310252019136), (-0.999627748876, 0.00206925967985, 0.0272044452423)-66.5696583317, 44.6742900417, 64.2333961075
2given(0.025032516015, 0.00362000149133, 0.999680083192), (-0.00204323616957, -0.999991169691, 0.00367229169557), (0.999684549409, -0.00213450920466, -0.0250248984522)-66.5494947577, 44.5130735419, -20.9117201794
3given(0.999998388627, -0.00176964452966, 0.000301830611322), (-0.00176992122093, -0.99999801148, 0.000918920182014), (0.000300203849053, -0.000919452917695, -0.999999532242)0.0617072658775, 89.174802824, 43.4622191385
4given(0.0274059581018, 0.00354378606286, 0.999618104598), (0.00418862031062, 0.999984530095, -0.00365992210099), (-0.999615610583, 0.00428732436754, 0.02739069056)-66.5822107123, 44.6820382104, 64.2164518851
5given(0.0243878009862, 0.00350844647047, 0.999696416902), (-0.0039631159851, -0.999985644621, 0.00360614255325), (0.999694717839, -0.00404985873699, -0.0243735465097)-66.5471609886, 44.5092982756, -20.9162400601
6given(0.999998439444, -0.00167324876268, 0.000566875179283), (-0.00167389946683, -0.999997938519, 0.00114935586357), (0.000564950852404, -0.001150302962, -0.999999178816)0.0577308123801, 89.1804573936, 43.4733566286
7given(0.0258017589042, 0.000328182541757, 0.999667025331), (0.00258075148652, 0.999996591882, -0.000394900842896), (-0.999663747947, 0.00259008129799, 0.0258008240112)-66.513124723, 44.566485522, 64.2491463767
8given(0.0236132208972, 0.000255490261478, 0.999721136379), (-0.00192063630147, -0.999998110298, 0.00030092610527), (0.999719324088, -0.00192720654048, -0.0236126855714)-66.4850141965, 44.6284976643, -20.9330245449
9given(0.999996817104, -0.00245663484499, 0.000575088929918), (-0.00245764319065, -0.999995432447, 0.0017592827746), (0.000570764387803, -0.00176069053838, -0.999998287097)0.082312539586, 89.1701026222, 43.4814908142
10given(0.0238857160516, 0.00342850213447, 0.999708816577), (0.000839014566009, 0.999993698395, -0.00344952543772), (-0.999714343512, 0.000921164643994, 0.0238826889701)-66.5329575243, 44.6966391368, 64.3381169739
11given(0.021438206915, 0.00354641544348, 0.999763885236), (-0.00081811702958, -0.999993311519, 0.0035647723809), (0.999769840498, -0.000894346187977, -0.0214351621431)-66.5007871257, 44.4909136799, -21.0264490566
12given(0.999997031927, -0.00238849211649, 0.00048087659991), (-0.00238907637171, -0.999996404275, 0.00121809343336), (0.000477965464247, -0.00121923866889, -0.999999142503)0.0824838170243, 89.1652735061, 43.4787134729

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要素

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タンパク質 , 1種, 8分子 ACEGIKMO

#1: タンパク質
Phycoerythrin beta subunit


分子量: 18578.090 Da / 分子数: 8 / 由来タイプ: 天然 / 由来: (天然) Cryptomonas pyrenoidifera (真核生物) / 参照: UniProt: A0A222AH92

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Phycoerythrin alpha- ... , 2種, 8分子 BFJNDHLP

#2: タンパク質
phycoerythrin alpha-1 subunit


分子量: 8465.604 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Cryptomonas pyrenoidifera (真核生物)
#3: タンパク質
phycoerythrin alpha-2 subunit


分子量: 7552.519 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Cryptomonas pyrenoidifera (真核生物)

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非ポリマー , 6種, 1286分子

#4: 化合物
ChemComp-PEB / PHYCOERYTHROBILIN / Phycoerythrobilin


分子量: 588.694 Da / 分子数: 8 / 由来タイプ: 合成 / 式: C33H40N4O6 / タイプ: SUBJECT OF INVESTIGATION
#5: 化合物
ChemComp-KPX / Bilin 584 (single linked) / (2E)-3-(2-{(Z)-[3-(2-carboxyethyl)-5-{(Z)-[(3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)prop-2-enoic acid


分子量: 586.678 Da / 分子数: 8 / 由来タイプ: 合成 / 式: C33H38N4O6 / タイプ: SUBJECT OF INVESTIGATION
#6: 化合物
ChemComp-KQ6 / Bilin 584 (doubly linked) / (2E)-3-(2-{(Z)-[3-(2-carboxyethyl)-5-{(Z)-[(3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2R)-4-ethyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)prop-2-enoic acid


分子量: 588.694 Da / 分子数: 8 / 由来タイプ: 合成 / 式: C33H40N4O6 / タイプ: SUBJECT OF INVESTIGATION
#7: 化合物
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / グリセロ-ル / グリセリン


分子量: 92.094 Da / 分子数: 9 / 由来タイプ: 天然 / 式: C3H8O3
#8: 化合物
ChemComp-KP9 / Bilin 618 (single linked) / (1R,4S,5R)-3-(BENZO[B]THIOPHEN-2-YL)METHOXY-1,4,5-TRIHYDROXY-2-(THIEN-2-YL)METHYLCYCLOHEX-2-EN-1-CARBOXYLATE


分子量: 584.662 Da / 分子数: 8 / 由来タイプ: 合成 / 式: C33H36N4O6 / タイプ: SUBJECT OF INVESTIGATION
#9: 水 ChemComp-HOH / water / 水


分子量: 18.015 Da / 分子数: 1245 / 由来タイプ: 天然 / 式: H2O

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詳細

研究の焦点であるリガンドがあるかY

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.38 Å3/Da / 溶媒含有率: 63.62 %
結晶化温度: 295 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 7.5 / 詳細: 20-25% PEG4000, 0.1 M HEPES

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データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: Australian Synchrotron / ビームライン: MX1 / 波長: 1.2632 Å
検出器タイプ: ADSC QUANTUM 315r / 検出器: CCD / 日付: 2010年10月21日
放射モノクロメーター: M / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1.2632 Å / 相対比: 1
反射解像度: 2→26.77 Å / Num. obs: 187274 / % possible obs: 99.78 % / 冗長度: 2 % / Biso Wilson estimate: 27 Å2 / CC1/2: 0.995 / Rmerge(I) obs: 0.05641 / Rpim(I) all: 0.05641 / Rrim(I) all: 0.07977 / Net I/σ(I): 6.18
反射 シェル解像度: 2→2.03 Å / 冗長度: 7.2 % / Rmerge(I) obs: 1.529 / Mean I/σ(I) obs: 0.9 / Num. unique obs: 9197 / CC1/2: 0.572 / Rpim(I) all: 0.93 / Χ2: 0.6 / % possible all: 100

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解析

ソフトウェア
名称バージョン分類
PHENIX1.20rc2_4400精密化
Aimlessv0.7.4データスケーリング
PHASERV2.8.3位相決定
MOSFLMデータ削減
精密化構造決定の手法: 分子置換
開始モデル: 4LMS

4lms


解像度: 2→26.77 Å / SU ML: 0.2173 / 交差検証法: FREE R-VALUE / σ(F): 1.97 / 位相誤差: 29.5371
立体化学のターゲット値: GeoStd + Monomer Library + CDL v1.2
Rfactor反射数%反射
Rfree0.2344 9630 5.15 %
Rwork0.2029 177338 -
obs0.2045 186968 99.84 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso mean: 34.11 Å2
精密化ステップサイクル: LAST / 解像度: 2→26.77 Å
タンパク質核酸リガンド溶媒全体
原子数14233 0 1430 1245 16908
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.004916116
X-RAY DIFFRACTIONf_angle_d0.85221931
X-RAY DIFFRACTIONf_chiral_restr0.04042374
X-RAY DIFFRACTIONf_plane_restr0.00522806
X-RAY DIFFRACTIONf_dihedral_angle_d17.56535898
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)
ens_1d_2AX-RAY DIFFRACTIONTorsion NCS0.23991297137
ens_1d_3AX-RAY DIFFRACTIONTorsion NCS0.658732881088
ens_1d_4AX-RAY DIFFRACTIONTorsion NCS0.257913050223
ens_1d_5AX-RAY DIFFRACTIONTorsion NCS0.700612037762
ens_1d_6AX-RAY DIFFRACTIONTorsion NCS0.219868022344
ens_2d_2EX-RAY DIFFRACTIONTorsion NCS0.338677513318
ens_2d_3EX-RAY DIFFRACTIONTorsion NCS0.301150525174
ens_2d_4EX-RAY DIFFRACTIONTorsion NCS0.281924214942
ens_3d_2GX-RAY DIFFRACTIONTorsion NCS0.279766760344
ens_4d_2KX-RAY DIFFRACTIONTorsion NCS0.373109459764
ens_4d_3KX-RAY DIFFRACTIONTorsion NCS0.386917248306
ens_4d_4KX-RAY DIFFRACTIONTorsion NCS0.348577629106
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2-2.020.36453260.34335908X-RAY DIFFRACTION100
2.02-2.050.33663020.32235810X-RAY DIFFRACTION100
2.05-2.070.32573260.31175865X-RAY DIFFRACTION100
2.07-2.10.3253100.3035863X-RAY DIFFRACTION100
2.1-2.130.30993190.28735860X-RAY DIFFRACTION100
2.13-2.150.28853030.27485877X-RAY DIFFRACTION100
2.15-2.190.29492990.26925886X-RAY DIFFRACTION99.98
2.19-2.220.29583340.26115833X-RAY DIFFRACTION100
2.22-2.250.27012960.24525913X-RAY DIFFRACTION100
2.25-2.290.26462990.23815893X-RAY DIFFRACTION99.97
2.29-2.330.27032790.23385889X-RAY DIFFRACTION99.98
2.33-2.370.23932890.22715912X-RAY DIFFRACTION99.98
2.37-2.420.23452920.21845919X-RAY DIFFRACTION100
2.42-2.470.21653200.21135855X-RAY DIFFRACTION99.97
2.47-2.520.24613300.20965870X-RAY DIFFRACTION99.98
2.52-2.580.25123610.2045849X-RAY DIFFRACTION100
2.58-2.640.25063600.20395853X-RAY DIFFRACTION99.97
2.64-2.710.23453560.19915881X-RAY DIFFRACTION99.95
2.71-2.790.24513670.19865843X-RAY DIFFRACTION99.98
2.79-2.880.23853300.20435899X-RAY DIFFRACTION99.94
2.88-2.990.21463490.20015880X-RAY DIFFRACTION99.97
2.99-3.110.22933140.19355936X-RAY DIFFRACTION99.92
3.11-3.250.22883040.19465956X-RAY DIFFRACTION99.97
3.25-3.420.23113100.19665954X-RAY DIFFRACTION99.98
3.42-3.630.21253960.18345867X-RAY DIFFRACTION99.98
3.63-3.910.212870.16746017X-RAY DIFFRACTION99.97
3.91-4.30.18463510.15115982X-RAY DIFFRACTION99.95
4.3-4.920.16323260.14566016X-RAY DIFFRACTION99.89
4.92-6.190.21012870.1756150X-RAY DIFFRACTION99.97
6.19-26.770.24193080.18536102X-RAY DIFFRACTION96.06
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
13.36117058063-4.771285116772.866759840047.85002651688-3.839495404162.47794736763-0.188129500578-0.115010675108-0.1320122692620.2883621511480.0912315876293-0.253744242930.04713581224460.05692151210430.1154883494790.2258515751560.01243255420070.07943227652720.382196644467-0.04362893525510.402259471562-29.40369.97864.688
25.12869828064-3.712378104555.70724154045.65285017531-5.136302167296.68642585697-0.161597136893-0.2171871854460.541613744424-0.336578551692-0.0776763402603-0.627393612712-0.07451461816580.08198562406710.1896933881150.2730041203890.004692940763990.1542551590310.369772543225-0.02092321160460.433647924995-25.62275.54753.206
30.875616075863-0.4919622131210.1802964738612.66012292244-2.628365166494.830946573850.06423547446510.291770338893-0.026543564802-0.419954615549-0.370262780206-0.3606942383220.2474285124340.1848336244580.2444521625870.404127070787-0.01059750784030.1709004937080.408040211901-0.07581291723440.335661515951-35.63263.03546.187
47.818089866741.163205562692.285608723454.980026679-0.6354127061033.21066482672-0.392388696688-0.264078355637-1.11930010583-0.1587970747730.413135328195-0.112418988250.75000269423-0.04101691587470.1147555882090.480137018120.07098203218050.2875537045040.3271404803460.01564425724940.543754275343-31.91742.49458.697
51.56878817174-2.17654715924-0.7050412675323.030278826441.271111305058.0253961113-0.4871055011810.534054548509-0.9273729841190.102343370746-0.02487486061660.1307791743441.20602862761-0.4486165170090.8875967763180.4494188233750.003831444686470.2519676327350.367900191826-0.1182458563850.474338719962-30.41643.4646.342
61.42137328644-1.111915804420.1953297286992.12191036431-0.1286673336546.06616755788-0.09256925534430.0646633483566-0.113914007353-0.0440137408076-0.00407187905890.00119562099020.214586544566-0.1372587963340.06955976492350.507346876640.08873738484910.3574729168060.4367303252430.1921284571470.742248559028-19.6241.24850.378
72.98873479189-0.829540586913-0.1886356129381.30993728627-0.03273381712881.71664909065-0.13305180725-0.163831930857-0.152806808559-0.07038320525340.0214322848262-0.05097973531020.2203475268290.0751246600412-0.0292955751910.3140499039030.007740044718690.2509375016490.344536006412-0.138264979990.405746873579-30.27252.43950.891
82.56570086485-1.54396886379-2.014902021982.742239884040.1533882005123.53467780491-0.259682867790.0881663733662-0.140500428238-0.03284842757230.151545118650.3190616552730.461768585285-0.1312059447280.1424758519310.206943600844-0.03984776718240.05019578420270.306769956505-0.08616993462560.219275091699-51.19570.64857.809
94.67042804443-0.765692476663-1.941883249137.02087926888-2.884634069213.725511875310.575331785768-0.5746025018350.6552133926671.01020139564-0.0794138227449-0.570104366702-0.5050404111080.64438374264-0.380851471660.28301210887-0.04559323491980.05704546273430.407040342115-0.1172793482930.318175072756-48.54784.90369.108
101.84804039638-2.823382847563.111330269085.39032522011-3.165415929987.57455444092-0.2571818282970.1982314460540.3443244165260.0225520817235-0.1507279617590.206244225059-0.471700997402-0.5642120313330.1378073085650.4361850913650.0252107025396-0.2583562315750.4757980889610.08115985058990.71923467464-67.88915.306-30.358
111.015349049310.1819987024210.5953516522720.0939245166459-0.07895256148391.00242473465-0.09404591192310.03612031844230.303919884897-0.282806692608-0.00709498407030.534294379381-0.197993607729-0.1074077642910.204120372960.4409988280240.0453350427131-0.2141328723890.3828426510710.08000815183890.468774860589-54.55528.266-29.354
121.050828753590.1364919613530.4166970099861.77375839785-0.5390559109532.15190153952-0.2053631069270.1663989240680.123253917783-0.6560270414950.09792127038330.177555398973-0.1348001723030.07739503149670.1175357121590.421119787724-0.0220124260455-0.1040603310020.4946358845680.06622881290340.232348399326-44.04922.125-34.393
131.72723067389-1.762365441010.2135721578883.922963093970.7550780085082.589934057120.01936947407630.0635195155806-0.0557477737753-0.187176981253-0.006732400752440.19176392817-0.266057845778-0.3001881212080.0104047292050.518018008695-0.0276177683851-0.2457907483220.4752363928910.1510734425240.434606366892-52.528.367-40.14
144.0040612085-5.481888563494.244546344967.79240292149-6.33704644895.46620069951-0.1058641235471.137314542770.868393939464-1.09626207969-0.02735473082361.55438929886-0.90149103175-1.213861963160.002221652366170.6015489506640.123601978672-0.2536129521130.7050271119720.1161043008960.95154108627-66.32734.239-25.747
150.328917807036-0.256387089655-0.4848238951024.36366541967-0.767413120521.12034723872-0.1211116151440.05216796906410.0530151271113-0.268098597586-0.08549986870920.238075911090.1275029780730.08010010746290.2532497665110.3397204667470.0607030855072-0.1700615790460.3441753701980.08262616070.433860890207-57.0189.802-26.583
168.87868324615-0.7542833320651.668281196664.19566202067-0.4115249443865.409736695440.133396086543-0.516177783895-0.193676137004-0.745881061917-0.08915081655590.6996040700360.488668344471-0.69962447285-0.07566324539940.351971470221-0.0298349090157-0.1143096074560.4139001494860.1089318436310.539050330925-64.651-0.14-26.977
171.019247891491.111739315130.729565249721.949346717430.8759830245341.38516125457-0.04033547006040.0384734833370.2063526865910.0131411426580.00862142139270.315686142411-0.0129724951363-0.04910472650410.03603779483430.3406614042950.0465259814102-0.07877306251060.3644682349350.0561769212890.37187948187-51.00823.265-20.25
182.834701415653.440808515862.397124857114.620085658873.980917592076.6963854998-0.4228668882620.2199637717750.577200478138-0.6045787330110.3428179590950.45368857039-0.797784195742-0.0265910649649-0.01918541689960.426490703469-0.0486420541643-0.08664826075710.3554927357030.1558284968190.405141996998-33.5232.777-27.118
195.28372726172-1.373918313610.7614519773551.584764854281.167003124391.69200288475-0.270792484522-0.4338495943270.2061219252220.2054516842770.151350232129-0.2095629327870.05765546106990.3206488202880.09002949102410.52677845822-0.0609971951115-0.2215819848340.3056849184370.09371068734390.372415902183-22.34135.423-5.173
202.144050047711.479797325430.259496002362.900404163640.13822058130.2386680500330.0335495793484-0.2424078929720.0529383894390.312958661299-0.1077752470.11686238157-0.0769413607282-0.04359407438450.06278533081710.2519847840270.0221414169083-0.03709916057890.2933429248810.0569380660560.174912829731-39.63817.043-11.463
219.256283483917.13937568808-0.5669186608076.59109034546-0.8524629058772.499198744730.243577758958-0.568681755976-0.2067886776530.719407779358-0.423126746438-0.276994659496-0.009448290065760.1518803046930.1300009321930.38278340870.0072698606876-0.06034971872910.3310593981840.0655273821970.2228821112-34.36111.8121.326
220.8391039998970.5300228533630.4423582540481.238200271190.6654139109760.397523281098-0.2033648898280.298709802263-0.0679444993695-0.1831235052540.102571145655-0.178738817952-0.124490349694-0.04135920591310.04859393783210.288056687819-0.0192971122059-0.06424526502660.3814632109180.06143933319820.213274219237-29.38619.355-21.383
233.668143686581.55977085043-1.978172799981.91772929605-0.2288011515182.000001582330.00700031245956-0.270144910951-0.2084127962660.149512778898-0.0672107383412-0.250277681860.09224315429380.2304266314270.05477616480720.3586206610640.0064673705964-0.1195638067530.39693296170.03998498071920.295354701229-25.62113.633-9.768
242.56480025622.22312365766-0.3343338969222.87953065748-0.01170063326932.17941349377-0.0165872220442-0.005674652701130.5210984911730.204748707978-0.0986823032090.392218825473-0.5387101517640.1472585096910.1558433283350.3369257342010.0123343977767-0.1353370596290.2974860320840.008170067804910.358705776651-34.09334.594-7.94
256.708374165362.83258676974-0.9584755202353.50041695281-1.915912199934.57289693381-0.124877998127-0.1636760522640.6352088739010.352522707536-0.0832436140513-0.0464417251424-0.524237779361-0.1000505625020.2218580529560.4301681290070.0301276026666-0.1550171720050.3072125447170.049838105190.328855630112-28.23541.137-6.245
263.340996576650.03025591244851.445201605325.355942943094.432199430368.80178275180.3344266334710.1061716370770.0564825623343-0.227170973639-0.237828211310.0516608486067-0.0249994919918-0.592223704313-0.04424022933710.2420564050940.00546097747441-0.04995482780070.3673152565360.08735698607160.308006553729-50.36913.418-18.506
270.418224727105-0.296519417028-0.0876325841692.54697257223-1.558851491351.14320686776-0.199839512305-0.880461835890.3497910801270.7596896054880.4028303138380.939181822785-0.288628771715-0.135514685333-0.01142540338590.5550277065890.1009806946630.2711132991570.452463129241-0.1151022170940.498233782543-9.65459.75544.623
281.06000315218-0.230728038463-0.5185789806620.894894672934-0.1026165704060.9531549361220.09268193920260.01188993462560.3727386724390.08229955059470.1372946994870.290082474528-0.264334964657-0.146258338473-0.2014380905840.4009431475380.07583812858190.2185879536980.4116806065730.03193190629760.511718114986-9.17871.40328.579
294.048861198553.631217898750.4718557388323.415373116150.3484090200011.786996656470.01434000774280.2957421857360.586459462470.283772503750.05525571808450.655806402185-0.113301619483-0.2069573875080.0278378838110.4284333809350.1653487578520.2366927945550.4265727483130.09513481167040.557396697013-18.77873.0129.017
306.98548397404-5.8202007291.990611618954.84960090005-1.658789673090.5673985373560.245864068028-0.3496365430850.2564941999990.3138618805440.7212266898030.639249627104-2.40389255897-2.6077557137-0.7626427958830.8899776740940.2912514686050.2756912663530.7464200932090.1362153094730.806289728533-3.99778.77342.794
311.13594545376-0.131650097898-0.4806157731731.25130172804-0.2883896597671.408526457240.1553714971330.2886794998580.0863401351420.1017386251740.08642214561230.316916521251-0.273052041712-0.2508879831130.2861126856010.0887928589857-0.04640161774940.1769421299430.355173306086-0.03646309536250.38389703338-5.27554.45733.903
323.09080295172-0.50113454536-3.154530524010.871000140307-0.1899109635543.84431996127-0.163222639596-0.682188358959-0.1076185084670.2950458042910.2446091448070.5158340896470.2827351515090.330344302601-0.1300908606750.369757780558-0.02909830016390.1517824610770.3529820321740.01368528154720.363439014103-5.86444.49741.364
332.066155986811.22374434996-0.8081527559434.08665297929-0.6728156123121.58962547356-0.09566380265370.24824367016-0.1966823281510.4246015122160.349931835838-0.07485613247570.054561781764-0.0191692978019-0.2242204131610.3180619245980.02786907539530.1290153753850.4635197696730.02066072449970.299004788567-6.67954.75438.05
342.446678908590.09681699311490.9904613627531.247773270520.1453552119253.126055050320.1966691038630.1232562904640.479091892383-0.1775796613210.199563944534-0.133911089685-0.578792148672-0.000888886711309-0.374370781850.4672040629560.04286274659730.2270398633350.3684745111810.04883321608180.5506813096312.30576.99217.36
351.963688204621.219271123810.6626483110737.57465757777-4.17035447239.094525673140.1715083396050.0257833707366-0.01554051692570.302063240349-0.188372464037-0.480321456922-0.2275243753830.2077085346380.5589664084450.535636922112-0.1558985133520.3204319984540.3626043170790.01349655475890.67648257862920.82829.395
360.862147081855-0.0156529038087-0.1291282242221.39015388215-0.5259884096780.2168446010260.08739214727740.1407349382090.221059487302-0.1193638720870.11110653987-0.0713706221911-0.250372983262-0.11893451768-0.132259749890.353071223287-0.02617344121710.1797479142490.361342282865-0.00212865565290.3992487757428.96765.02411.755
370.1484903587250.395784765868-0.4113430830661.3942403872-1.092918353663.00755330706-0.04890020565720.03311342880290.126352296187-0.16236610801-0.0811007342532-0.5244503011630.06799253398150.2557833380330.475992705110.29154664611-0.0829811971280.1916839789290.359052123842-0.02759657221760.5029284275915.20163.43916.435
381.132076746380.373171526184-1.964803303763.14338690478-3.540035671997.94216263523-0.1450189895810.144630290026-0.0335875710131-0.3068908110490.0263914722255-0.405299065330.06341630279150.5079345121490.4433816736860.428040452503-0.07580822133290.2677594608940.3862848710060.04464260587210.59697577523.25861.635.997
390.307788247098-0.8784171771231.045097855883.01532930686-2.665886725113.79989927186-0.00414928755226-0.04082242220520.195243358286-0.1992869443460.0918954557973-0.2526249086340.0890540132246-0.0134774020654-0.08106898079450.28282376916-0.05505871049850.1391809893990.321990106429-0.01300602904060.34567379178112.74354.52513.662
407.96977953089-6.69354617279-0.6836954610077.623658888153.656073621974.80701571139-0.45146173908-0.212542288484-0.907866171961-0.3172389155150.07667675355780.4101956239350.833555720359-0.743194443860.3790599697480.665388834283-0.1156310187680.1428587077110.4370935788720.1433011392370.645168540175-7.77869.7913.388
415.72989607264-3.28117302580.6991305335312.802203764610.1525390732740.4923645497680.135675971822-0.2019562266660.200086446195-0.3202568239720.2535798040880.108989532332-0.0910313840942-0.224745536784-0.3807610670920.464706196049-0.05250616476130.2117472186120.3991826413850.08381153415570.4466985792287.80562.4551.704
421.6725169157-1.608781921630.3929754087583.10664475633-1.879388851282.610475195430.1667660261350.1478251980690.4444044159830.19187990498-0.157632900839-0.335755927944-0.42376239384-0.001808627977180.0154523466670.499652373379-0.07262993033590.2357974770940.3757632096240.002907310963720.59987166559314.83681.34310.649
432.59367290865-0.05004919937681.421977994020.1327355132890.2349600218741.78805339343-0.0961020165491-0.2536755510530.331965066917-0.1729381705040.199241929007-0.247246948207-0.427241116187-0.132109901194-0.0193920654690.552609855297-0.004416545620970.2987061215430.4090256145410.0417165854220.64150128585714.6284.2454.826
443.153067714990.4499005156741.692388940156.032380501122.772839242543.67748908328-0.0645777882025-0.0393388526353-0.0808570196370.309655025772-0.07886834394960.0670231179153-0.0297269622134-0.2442156155450.130650773110.299475851540.02953935242410.145336399720.297985679489-0.01967991479250.3812173613512.77957.90527.271
457.317784372950.5298423978810.7941099503515.54767672704-0.5653921134411.93689513296-0.2545874042610.749031997234-0.643728546981-1.017192392640.4017646884550.7788557323640.173047479733-0.146932984611-0.1197366355790.467819782097-0.0561831135653-0.1320799067740.560783519737-0.01972570401520.349053986501-9.65829.419-1.176
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471.12299451655-0.348587773057-0.6208590802062.431504470280.6946489971470.452350471690.1795594779810.349850077410.0221444893078-0.4994651506230.008906225592450.3056699660410.119678679114-0.1296259241230.08319626961750.462341700656-0.0522799063351-0.2041231912520.344380003197-0.02882762991480.257110609744-11.4438.2455.485
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631.730411655611.064996707690.6003946622542.46832363740.06561300499031.937748046510.163107143580.259234518522-0.1703092812550.169965143034-0.131673444354-0.5787517222060.1772847114740.121622594389-0.06772559298850.1061605726360.0575090941896-0.05801132786950.2823062417460.001907920405750.34130776739618.86418.42230.459
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662.341287229570.646998294133-0.1623739527592.65965812433-2.10063976223.942957343480.0230592805124-0.0328873403354-0.125140085309-0.192500529942-0.0207640541031-0.3783922377080.529620386717-0.0267197253119-0.06119343984540.1294610248430.00943806619277-0.1724708189740.205179950751-0.06114424792720.27702082091614.5034.98538.638
671.481608838820.7785455854151.101706580192.21894547435-1.461376366233.108231592630.112639125589-0.0431525435231-0.0475273023913-0.2835270318970.1800230294760.2046540246270.00602767183682-0.239207271034-0.2548302092530.141286123368-0.01273042436830.02848917932390.330582737439-0.01573888808270.1405425601652.77131.27416.163
681.2554624092-1.33740119019-1.862538676133.83439755356-0.2894282544214.90794670108-0.201594458333-0.0176401605367-0.1478882184050.3462111410850.3582683864670.5407523117470.493766886475-0.7446024246-0.1240270044290.223741011679-0.07862048824390.0769112501840.3860999054780.01543133444320.377002892658-68.00373.86973.717
691.24160155005-1.01719157495-0.8366894539842.683780036030.7281536061261.2916762144-0.185614848807-0.0786878571137-0.1581102459660.2060410483740.1147465172780.01634695659680.1971150252290.05173555228890.09638940108580.2129712246350.01499465716980.08879949137980.323537597227-0.0151053660080.23638411111-50.69565.08172.97
702.45588381035-1.00834127426-2.661272509820.5638721719750.533120962995.01413909256-0.1709226765150.0631606027943-0.235066348030.18849802215-0.01260489760740.2823272846350.394491095859-0.2031368014790.1679472364720.152743985688-0.03373348435260.08460145475060.284751997379-0.05273641678480.31502883321-55.45759.95368.895
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723.046312416781.45661826044-0.1564149401814.739496180450.9532851824111.4040486015-0.190847446444-0.310042343472-0.2853343716490.03884780291140.00993461106216-0.09620040238160.3035634995580.08054585009840.1711476706210.2135150955970.047954882790.05646142770630.379899286306-0.005346535931160.253109762163-44.72261.39876.99
734.56758587897-1.37137011086-3.364467081626.12678308707-0.2567883043042.757785383280.1994806751920.002644321075090.1503137761620.27787066672-0.170930773433-0.478761698229-0.232252966280.26389705632-0.06398806097550.1912622311170.0399610073968-0.04879404635880.447514942809-0.1315366883680.306397394565-42.86678.41979.287
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精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN G AND RESID 125:159 )G125 - 159
2X-RAY DIFFRACTION2( CHAIN G AND RESID 160:178 )G160 - 178
3X-RAY DIFFRACTION3( CHAIN H AND RESID 1:15 )H1 - 15
4X-RAY DIFFRACTION4( CHAIN H AND RESID 16:25 )H16 - 25
5X-RAY DIFFRACTION5( CHAIN H AND RESID 26:30 )H26 - 30
6X-RAY DIFFRACTION6( CHAIN H AND RESID 31:35 )H31 - 35
7X-RAY DIFFRACTION7( CHAIN H AND RESID 36:48 )H36 - 48
8X-RAY DIFFRACTION8( CHAIN H AND RESID 49:63 )H49 - 63
9X-RAY DIFFRACTION9( CHAIN H AND RESID 64:70 )H64 - 70
10X-RAY DIFFRACTION10( CHAIN I AND RESID 2:21 )I2 - 21
11X-RAY DIFFRACTION11( CHAIN I AND RESID 22:124 )I22 - 124
12X-RAY DIFFRACTION12( CHAIN I AND RESID 125:159 )I125 - 159
13X-RAY DIFFRACTION13( CHAIN I AND RESID 160:178 )I160 - 178
14X-RAY DIFFRACTION14( CHAIN J AND RESID 1:6 )J1 - 6
15X-RAY DIFFRACTION15( CHAIN J AND RESID 7:20 )J7 - 20
16X-RAY DIFFRACTION16( CHAIN J AND RESID 21:34 )J21 - 34
17X-RAY DIFFRACTION17( CHAIN J AND RESID 35:67 )J35 - 67
18X-RAY DIFFRACTION18( CHAIN J AND RESID 68:78 )J68 - 78
19X-RAY DIFFRACTION19( CHAIN K AND RESID 15:34 )K15 - 34
20X-RAY DIFFRACTION20( CHAIN K AND RESID 35:100 )K35 - 100
21X-RAY DIFFRACTION21( CHAIN K AND RESID 101:124 )K101 - 124
22X-RAY DIFFRACTION22( CHAIN K AND RESID 125:159 )K125 - 159
23X-RAY DIFFRACTION23( CHAIN K AND RESID 160:178 )K160 - 178
24X-RAY DIFFRACTION24( CHAIN L AND RESID 1:25 )L1 - 25
25X-RAY DIFFRACTION25( CHAIN L AND RESID 26:48 )L26 - 48
26X-RAY DIFFRACTION26( CHAIN L AND RESID 49:70 )L49 - 70
27X-RAY DIFFRACTION27( CHAIN M AND RESID 2:21 )M2 - 21
28X-RAY DIFFRACTION28( CHAIN M AND RESID 22:159 )M22 - 159
29X-RAY DIFFRACTION29( CHAIN M AND RESID 160:178 )M160 - 178
30X-RAY DIFFRACTION30( CHAIN N AND RESID 2:6 )N2 - 6
31X-RAY DIFFRACTION31( CHAIN N AND RESID 7:20 )N7 - 20
32X-RAY DIFFRACTION32( CHAIN N AND RESID 21:34 )N21 - 34
33X-RAY DIFFRACTION33( CHAIN N AND RESID 35:47 )N35 - 47
34X-RAY DIFFRACTION34( CHAIN N AND RESID 48:78 )N48 - 78
35X-RAY DIFFRACTION35( CHAIN O AND RESID 15:21 )O15 - 21
36X-RAY DIFFRACTION36( CHAIN O AND RESID 22:76 )O22 - 76
37X-RAY DIFFRACTION37( CHAIN O AND RESID 77:100 )O77 - 100
38X-RAY DIFFRACTION38( CHAIN O AND RESID 101:113 )O101 - 113
39X-RAY DIFFRACTION39( CHAIN O AND RESID 114:143 )O114 - 143
40X-RAY DIFFRACTION40( CHAIN O AND RESID 144:151 )O144 - 151
41X-RAY DIFFRACTION41( CHAIN O AND RESID 152:178 )O152 - 178
42X-RAY DIFFRACTION42( CHAIN P AND RESID 1:30 )P1 - 30
43X-RAY DIFFRACTION43( CHAIN P AND RESID 31:48 )P31 - 48
44X-RAY DIFFRACTION44( CHAIN P AND RESID 49:70 )P49 - 70
45X-RAY DIFFRACTION45( CHAIN A AND RESID 2:21 )A2 - 21
46X-RAY DIFFRACTION46( CHAIN A AND RESID 22:100 )A22 - 100
47X-RAY DIFFRACTION47( CHAIN A AND RESID 101:124 )A101 - 124
48X-RAY DIFFRACTION48( CHAIN A AND RESID 125:178 )A125 - 178
49X-RAY DIFFRACTION49( CHAIN B AND RESID 1:6 )B1 - 6
50X-RAY DIFFRACTION50( CHAIN B AND RESID 7:20 )B7 - 20
51X-RAY DIFFRACTION51( CHAIN B AND RESID 21:34 )B21 - 34
52X-RAY DIFFRACTION52( CHAIN B AND RESID 35:47 )B35 - 47
53X-RAY DIFFRACTION53( CHAIN B AND RESID 48:78 )B48 - 78
54X-RAY DIFFRACTION54( CHAIN C AND RESID 15:21 )C15 - 21
55X-RAY DIFFRACTION55( CHAIN C AND RESID 22:34 )C22 - 34
56X-RAY DIFFRACTION56( CHAIN C AND RESID 35:76 )C35 - 76
57X-RAY DIFFRACTION57( CHAIN C AND RESID 77:100 )C77 - 100
58X-RAY DIFFRACTION58( CHAIN C AND RESID 101:113 )C101 - 113
59X-RAY DIFFRACTION59( CHAIN C AND RESID 114:143 )C114 - 143
60X-RAY DIFFRACTION60( CHAIN C AND RESID 144:151 )C144 - 151
61X-RAY DIFFRACTION61( CHAIN C AND RESID 152:159 )C152 - 159
62X-RAY DIFFRACTION62( CHAIN C AND RESID 160:178 )C160 - 178
63X-RAY DIFFRACTION63( CHAIN D AND RESID 1:15 )D1 - 15
64X-RAY DIFFRACTION64( CHAIN D AND RESID 16:25 )D16 - 25
65X-RAY DIFFRACTION65( CHAIN D AND RESID 26:30 )D26 - 30
66X-RAY DIFFRACTION66( CHAIN D AND RESID 31:48 )D31 - 48
67X-RAY DIFFRACTION67( CHAIN D AND RESID 49:70 )D49 - 70
68X-RAY DIFFRACTION68( CHAIN E AND RESID 2:21 )E2 - 21
69X-RAY DIFFRACTION69( CHAIN E AND RESID 22:76 )E22 - 76
70X-RAY DIFFRACTION70( CHAIN E AND RESID 77:100 )E77 - 100
71X-RAY DIFFRACTION71( CHAIN E AND RESID 101:124 )E101 - 124
72X-RAY DIFFRACTION72( CHAIN E AND RESID 125:148 )E125 - 148
73X-RAY DIFFRACTION73( CHAIN E AND RESID 149:159 )E149 - 159
74X-RAY DIFFRACTION74( CHAIN E AND RESID 160:178 )E160 - 178
75X-RAY DIFFRACTION75( CHAIN F AND RESID 1:6 )F1 - 6
76X-RAY DIFFRACTION76( CHAIN F AND RESID 7:20 )F7 - 20
77X-RAY DIFFRACTION77( CHAIN F AND RESID 21:25 )F21 - 25
78X-RAY DIFFRACTION78( CHAIN F AND RESID 26:34 )F26 - 34
79X-RAY DIFFRACTION79( CHAIN F AND RESID 35:47 )F35 - 47
80X-RAY DIFFRACTION80( CHAIN F AND RESID 48:78 )F48 - 78
81X-RAY DIFFRACTION81( CHAIN G AND RESID 15:21 )G15 - 21
82X-RAY DIFFRACTION82( CHAIN G AND RESID 22:76 )G22 - 76
83X-RAY DIFFRACTION83( CHAIN G AND RESID 77:100 )G77 - 100
84X-RAY DIFFRACTION84( CHAIN G AND RESID 101:124 )G101 - 124

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る