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- PDB-7spt: Crystal structure of exofacial state human glucose transporter GLUT3 -
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Open data
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Basic information
Entry | Database: PDB / ID: 7spt | ||||||||||||
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Title | Crystal structure of exofacial state human glucose transporter GLUT3 | ||||||||||||
![]() | Solute carrier family 2, facilitated glucose transporter member 3![]() | ||||||||||||
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Function / homology | ![]() galactose transmembrane transporter activity / dehydroascorbic acid transmembrane transporter activity / dehydroascorbic acid transport / galactose transmembrane transport / glucose transmembrane transporter activity / D-glucose transmembrane transporter activity / Cellular hexose transport / Vitamin C (ascorbate) metabolism / glucose import across plasma membrane / L-ascorbic acid metabolic process ...galactose transmembrane transporter activity / dehydroascorbic acid transmembrane transporter activity / dehydroascorbic acid transport / galactose transmembrane transport / glucose transmembrane transporter activity / D-glucose transmembrane transporter activity / Cellular hexose transport / Vitamin C (ascorbate) metabolism / glucose import across plasma membrane / L-ascorbic acid metabolic process / glucose transmembrane transport / ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | ![]() ![]() ![]() | ||||||||||||
![]() | Wang, N. / Jiang, X. / Yan, N. | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Molecular basis for inhibiting human glucose transporters by exofacial inhibitors. Authors: Wang, N. / Zhang, S. / Yuan, Y. / Xu, H. / Defossa, E. / Matter, H. / Besenius, M. / Derdau, V. / Dreyer, M. / Halland, N. / He, K.H. / Petry, S. / Podeschwa, M. / Tennagels, N. / Jiang, X. / Yan, N. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 206.9 KB | Display | ![]() |
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PDB format | ![]() | 162 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7spsC ![]() 4zw9S C: citing same article ( S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 57080.105 Da / Num. of mol.: 1 / Mutation: N43T, S64W, I305W Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() | ||||||
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#2: Chemical | #3: Sugar | ChemComp-GLC / | ![]() #4: Water | ChemComp-HOH / | ![]() Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.62 Å3/Da / Density % sol: 53.01 % |
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Crystal grow![]() | Temperature: 293 K / Method: lipidic cubic phase Details: 40% v/v PEG400, 100 mM Tris, pH 7.6, 100 mM magnesium chloride |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Oct 14, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.1→50 Å / Num. obs: 34213 / % possible obs: 99.9 % / Redundancy: 13.49 % / CC1/2: 0.98 / Net I/σ(I): 6.34 |
Reflection shell | Resolution: 2.1→2.2 Å / Num. unique obs: 4424 / CC1/2: 0.758 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB entry 4ZW9 Resolution: 2.1→46.965 Å / SU ML: 0.24 / Cross valid method: THROUGHOUT / σ(F): 1.38 / Phase error: 21.85 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 114.94 Å2 / Biso mean: 30.8672 Å2 / Biso min: 8.78 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.1→46.965 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / % reflection obs: 100 %
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Refinement TLS params. | Method: refined / Origin x: 91.1376 Å / Origin y: 8.7049 Å / Origin z: 114.1438 Å
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Refinement TLS group |
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