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Open data
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Basic information
Entry | Database: PDB / ID: 7.0E+76 | ||||||
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Title | The structure of chloroplastic TaPGI | ||||||
![]() | Glucose-6-phosphate isomerase![]() | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Gao, F. / Liu, C.M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Engineering of the cytosolic form of phosphoglucose isomerase into chloroplasts improves plant photosynthesis and biomass. Authors: Gao, F. / Zhang, H. / Zhang, W. / Wang, N. / Zhang, S. / Chu, C. / Liu, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 456.3 KB | Display | ![]() |
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PDB format | ![]() | 334 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7e77C ![]() 7e78C ![]() 3ujhS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 61121.277 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() References: UniProt: A0A3B6LNA8, ![]() #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.29 Å3/Da / Density % sol: 46.31 % |
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Crystal grow![]() | Temperature: 291 K / Method: vapor diffusion, sitting drop / Details: MES, PEG MME 2000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Apr 18, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.65→47.66 Å / Num. obs: 29248 / % possible obs: 92 % / Redundancy: 14.2 % / Biso Wilson estimate: 36.2 Å2 / Rmerge(I) obs: 0.134 / Net I/σ(I): 14.53 |
Reflection shell | Resolution: 2.65→2.7 Å / Num. unique obs: 8 / CC1/2: 0.46 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 3UJH Resolution: 2.65→47.66 Å / SU ML: 0.2966 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 25.0715 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 38.46 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.65→47.66 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 4.74139404198 Å / Origin y: 27.771080981 Å / Origin z: 173.114318946 Å
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Refinement TLS group | Selection details: all |