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Open data
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Basic information
Entry | Database: PDB / ID: 6y7f | |||||||||
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Title | Crystal structure of human ELOVL fatty acid elongase 7 (ELOVL7) | |||||||||
![]() | Elongation of very long chain fatty acids protein 7 | |||||||||
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Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Nie, L. / Pike, A.C.W. / Bushell, S.R. / Chu, A. / Cole, V. / Speedman, D. / Rodstrom, K.E.J. / Kupinska, K. / Shrestha, L. / Mukhopadhyay, S.M.M. ...Nie, L. / Pike, A.C.W. / Bushell, S.R. / Chu, A. / Cole, V. / Speedman, D. / Rodstrom, K.E.J. / Kupinska, K. / Shrestha, L. / Mukhopadhyay, S.M.M. / Burgess-Brown, N.A. / Love, J. / Edwards, A.M. / Arrowsmith, C.H. / Bountra, C. / Carpenter, E.P. / Structural Genomics Consortium (SGC) | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of human ELOVL fatty acid elongase 7 (ELOVL7) Authors: Nie, L. / Pike, A.C.W. / Bushell, S.R. / Chu, A. / Cole, V. / Speedman, D. / Kupinska, K. / Shrestha, L. / Mukhopadhyay, S.M.M. / Burgess-Brown, N.A. / Love, J. / Edwards, A.M. / Arrowsmith, ...Authors: Nie, L. / Pike, A.C.W. / Bushell, S.R. / Chu, A. / Cole, V. / Speedman, D. / Kupinska, K. / Shrestha, L. / Mukhopadhyay, S.M.M. / Burgess-Brown, N.A. / Love, J. / Edwards, A.M. / Arrowsmith, C.H. / Bountra, C. / Carpenter, E.P. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 231.5 KB | Display | ![]() |
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PDB format | ![]() | 197.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 34258.164 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: A1L3X0, ![]() #2: Chemical | #3: Chemical | ChemComp-37X / #4: Chemical | ![]() #5: Water | ChemComp-HOH / | ![]() Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.73 Å3/Da / Density % sol: 67.04 % |
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Crystal grow![]() | Temperature: 279 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: 30-36% PEG400 -- 0.1M acetate pH 4.5 -- 0.23M sodium chloride |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Dec 7, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.052→62.262 Å / Num. obs: 36724 / % possible obs: 58.7 % / Redundancy: 6.9 % / CC1/2: 0.987 / Rmerge(I) obs: 0.101 / Rpim(I) all: 0.062 / Rrim(I) all: 0.119 / Net I/σ(I): 8.3 |
Reflection shell | Resolution: 2.052→2.182 Å / Redundancy: 6.2 % / Rmerge(I) obs: 0.703 / Mean I/σ(I) obs: 1.9 / Num. unique obs: 1837 / CC1/2: 0.813 / Rpim(I) all: 0.449 / Rrim(I) all: 0.839 / % possible all: 17.5 |
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Processing
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Refinement | Method to determine structure![]() ![]() Details: Structure refined against STARANISO anisotropically truncated data. LSSR restraints were used and a single TLS group was refined for each chain. Heterogen dictionaries were generated using ...Details: Structure refined against STARANISO anisotropically truncated data. LSSR restraints were used and a single TLS group was refined for each chain. Heterogen dictionaries were generated using GRADE. ACCOMPANYING SF CIF CONTAINS STARANISO DATA USED FOR REFINEMENT ALONG WITH SCALED MERGED DATA WITHOUT TRUNCATION.
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Displacement parameters | Biso mean: 43.99 Å2
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Refine analyze | Luzzati coordinate error obs: 0.29 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.052→28.68 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.052→2.1 Å
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Refinement TLS params. | Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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