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Open data
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Basic information
Entry | Database: PDB / ID: 6otb | ||||||
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Title | NMR structure of alpha conotoxin SII | ||||||
![]() | Alpha-conotoxin S2 | ||||||
![]() | ![]() | ||||||
Function / homology | ![]() host cell postsynaptic membrane / acetylcholine receptor inhibitor activity / ion channel regulator activity / ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Chin, Y.K.-Y. / Wilhelm, P. / Alewood, P.F. | ||||||
![]() | ![]() Title: Structural and Pharmacological Characterization of alpha-Conotoxin SII: The sole member of framework II Authors: Wilhelm, P. / Chin, Y.K.-Y. / Luna-Ramirez, K. / Tae, H.-S. / King, G.F. / Adams, D.J. / Alewood, P.F. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 71.5 KB | Display | ![]() |
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PDB format | ![]() | 48.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 1797.026 Da / Num. of mol.: 1 / Fragment: residues 51-69 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() | ||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution Contents: 20 mM sodium phosphate, 2.1 mM Alpha conotoxin SII, 95% H2O/5% D2O Label: SII / Solvent system: 95% H2O/5% D2O | ||||||||||||
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Sample |
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Sample conditions | Ionic strength: 20 mM / Label: SII / pH: 6 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model![]() |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 2 Details: The authors state that they initially calculated and kept 30 structures according to the structures' target function. Then they selected 20 out of the 30 according to the MolProbity score (i. ...Details: The authors state that they initially calculated and kept 30 structures according to the structures' target function. Then they selected 20 out of the 30 according to the MolProbity score (i.e. stereochemical properties). | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 30 / Conformers submitted total number: 20 |