- PDB-6jp1: An X-ray structure of met sperm whale F43Y/T67R myoglobin with Ty... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6jp1
Title
An X-ray structure of met sperm whale F43Y/T67R myoglobin with Tyr-heme double cross-links
Components
Myoglobin
Keywords
OXYGEN TRANSPORT / sperm whale / myoglobin
Function / homology
Function and homology information
nitrite reductase activity / Oxidoreductases; Acting on other nitrogenous compounds as donors / sarcoplasm / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / removal of superoxide radicals / oxygen carrier activity / peroxidase activity / oxygen binding / heme binding / metal ion binding Similarity search - Function
Resolution: 1.99→36.44 Å / Cor.coef. Fo:Fc: 0.959 / Cor.coef. Fo:Fc free: 0.929 / SU B: 4.367 / SU ML: 0.12 / Cross valid method: THROUGHOUT / ESU R: 0.195 / ESU R Free: 0.167 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.22049
1102
5.1 %
RANDOM
Rwork
0.17104
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obs
0.17349
20490
99.28 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK