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Yorodumi- PDB-6j9p: Solution structure of a salt-resistant antimicrobial peptide, RR12 -
+Open data
-Basic information
Entry | Database: PDB / ID: 6j9p | ||||||
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Title | Solution structure of a salt-resistant antimicrobial peptide, RR12 | ||||||
Components | salt-resistant antimicrobial peptide RR12 | ||||||
Keywords | ANTIMICROBIAL PROTEIN / AMP / SDS / Salt-resistant | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Tseng, T.S. | ||||||
Citation | Journal: To Be Published Title: Solution structure of a salt-resistant antimicrobial peptide, RR12 Authors: Tseng, T.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6j9p.cif.gz | 47.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6j9p.ent.gz | 32.2 KB | Display | PDB format |
PDBx/mmJSON format | 6j9p.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/j9/6j9p ftp://data.pdbj.org/pub/pdb/validation_reports/j9/6j9p | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1596.089 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 1.5 mg/mL RR12, 90% H2O/10% D2O / Label: natural / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 1.5 mg/mL / Component: RR12 / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength units: mM / Label: NA / pH: 5 / Pressure units: Pa / Temperature: 310 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 2 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 |