- PDB-6bto: BMP1 complexed with (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R})-2-... -
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Basic information
Entry
Database: PDB / ID: 6bto
Title
BMP1 complexed with (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R})-2-[2-(oxidanylamino)-2-oxidanylidene-ethyl]heptanoyl]-2-azabicyclo[2.2.1]heptan-3-yl]carbonylamino]-2-phenyl-ethanoic acid
Components
Bone morphogenetic protein 1
Keywords
HYDROLASE / endopeptidase
Function / homology
Function and homology information
procollagen C-endopeptidase / Anchoring fibril formation / Crosslinking of collagen fibrils / positive regulation of cartilage development / HDL assembly / Collagen biosynthesis and modifying enzymes / dorsal/ventral pattern formation / collagen fibril organization / cartilage condensation / Degradation of the extracellular matrix ...procollagen C-endopeptidase / Anchoring fibril formation / Crosslinking of collagen fibrils / positive regulation of cartilage development / HDL assembly / Collagen biosynthesis and modifying enzymes / dorsal/ventral pattern formation / collagen fibril organization / cartilage condensation / Degradation of the extracellular matrix / ossification / skeletal system development / cytokine activity / growth factor activity / protein processing / metalloendopeptidase activity / metallopeptidase activity / peptidase activity / vesicle / cell differentiation / serine-type endopeptidase activity / calcium ion binding / Golgi apparatus / proteolysis / extracellular space / zinc ion binding / extracellular region / identical protein binding Similarity search - Function
Bone morphogenetic protein 1/tolloid-like protein / Tolloid/BMP1 peptidase domain / Astacin-like domain profile. / Peptidase M12A / Astacin (Peptidase family M12A) / : / CUB domain / Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. / CUB domain / CUB domain profile. ...Bone morphogenetic protein 1/tolloid-like protein / Tolloid/BMP1 peptidase domain / Astacin-like domain profile. / Peptidase M12A / Astacin (Peptidase family M12A) / : / CUB domain / Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. / CUB domain / CUB domain profile. / Spermadhesin, CUB domain superfamily / Calcium-binding EGF domain / Peptidase, metallopeptidase / Zinc-dependent metalloprotease / Collagenase (Catalytic Domain) / Collagenase (Catalytic Domain) / Coagulation Factor Xa inhibitory site / EGF-type aspartate/asparagine hydroxylation site / EGF-like calcium-binding, conserved site / Calcium-binding EGF-like domain signature. / Aspartic acid and asparagine hydroxylation site. / Metallopeptidase, catalytic domain superfamily / EGF-like calcium-binding domain / Calcium-binding EGF-like domain / Epidermal growth factor-like domain. / EGF-like domain profile. / Growth factor receptor cysteine-rich domain superfamily / EGF-like domain signature 2. / EGF-like domain / Neutral zinc metallopeptidases, zinc-binding region signature. / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.05→42.45 Å / Cor.coef. Fo:Fc: 0.921 / Cor.coef. Fo:Fc free: 0.888 / SU B: 8.277 / SU ML: 0.125 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.208 / ESU R Free: 0.177 Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2445
1593
5 %
RANDOM
Rwork
0.2076
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obs
0.2095
29975
99.85 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
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