- PDB-5jkk: Crystal structure of the negatively supercharged variant Ftn(neg)... -
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Basic information
Entry
Database: PDB / ID: 5jkk
Title
Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin
Components
Ferritin heavy chain
Keywords
OXIDOREDUCTASE / protein design / protein engineering / charged protein containers / binary protein structures / self-assembly / binary nanoparticle superlattices
Function / homology
Function and homology information
iron ion sequestering activity / : / autolysosome / Scavenging by Class A Receptors / Golgi Associated Vesicle Biogenesis / ferroxidase / intracellular sequestering of iron ion / ferroxidase activity / negative regulation of fibroblast proliferation / ferric iron binding ...iron ion sequestering activity / : / autolysosome / Scavenging by Class A Receptors / Golgi Associated Vesicle Biogenesis / ferroxidase / intracellular sequestering of iron ion / ferroxidase activity / negative regulation of fibroblast proliferation / ferric iron binding / ferrous iron binding / Iron uptake and transport / tertiary granule lumen / iron ion transport / intracellular iron ion homeostasis / ficolin-1-rich granule lumen / immune response / iron ion binding / negative regulation of cell population proliferation / Neutrophil degranulation / extracellular exosome / extracellular region / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function
A: Ferritin heavy chain B: Ferritin heavy chain C: Ferritin heavy chain D: Ferritin heavy chain E: Ferritin heavy chain F: Ferritin heavy chain G: Ferritin heavy chain H: Ferritin heavy chain hetero molecules
A: Ferritin heavy chain B: Ferritin heavy chain C: Ferritin heavy chain D: Ferritin heavy chain E: Ferritin heavy chain F: Ferritin heavy chain G: Ferritin heavy chain H: Ferritin heavy chain hetero molecules
A: Ferritin heavy chain B: Ferritin heavy chain C: Ferritin heavy chain D: Ferritin heavy chain E: Ferritin heavy chain F: Ferritin heavy chain G: Ferritin heavy chain H: Ferritin heavy chain hetero molecules
A: Ferritin heavy chain B: Ferritin heavy chain C: Ferritin heavy chain D: Ferritin heavy chain E: Ferritin heavy chain F: Ferritin heavy chain G: Ferritin heavy chain H: Ferritin heavy chain hetero molecules
Ferritinheavychain / / Ferritin H subunit / Cell proliferation-inducing gene 15 protein / Negatively charged variant of ...Ferritin H subunit / Cell proliferation-inducing gene 15 protein / Negatively charged variant of human heavy chain ferritin
Mass: 21355.549 Da / Num. of mol.: 8 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 / Production host: Escherichia coli (E. coli) / References: UniProt: P02794, ferroxidase
Resolution: 1.6→48.37 Å / Cor.coef. Fo:Fc: 0.972 / Cor.coef. Fo:Fc free: 0.966 / SU B: 0.784 / SU ML: 0.029 / SU R Cruickshank DPI: 0.0528 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.053 / ESU R Free: 0.054 Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.1429
12488
4.9 %
RANDOM
Rwork
0.1238
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-
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obs
0.1247
243300
99.87 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
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