Entry Database : PDB / ID : 5dkv Structure visualization Downloads & linksTitle Crystal Structure of an ABC transporter Solute Binding Protein from Agrobacterium vitis(Avis_5339, TARGET EFI-511225) bound with alpha-D-Tagatopyranose ComponentsABC transporter substrate binding protein (Ribose) Details Keywords SUGAR BINDING PROTEIN / Solute Binding Protein / ENZYME FUNCTION INITIATIVE / EFI / Structural GenomicsFunction / homology Periplasmic binding protein / Periplasmic binding protein domain / Twin arginine translocation (Tat) signal profile. / Twin-arginine translocation pathway, signal sequence / Periplasmic binding protein-like I / alpha-D-tagatopyranose / ABC transporter substrate binding protein (Ribose) Function and homology informationBiological species Agrobacterium vitis (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 1.68 Å DetailsAuthors Yadava, U. / Al Obaidi, N.F. / Morisco, L.L. / Benach, J. / Koss, J. / Wasserman, S.R. / Attonito, J.D. / Scott Glenn, A. / Chamala, S. / Chowdhury, S. ...Yadava, U. / Al Obaidi, N.F. / Morisco, L.L. / Benach, J. / Koss, J. / Wasserman, S.R. / Attonito, J.D. / Scott Glenn, A. / Chamala, S. / Chowdhury, S. / Lafleur, J. / Love, J. / Seidel, R.D. / Whalen, K.L. / Gerlt, J.A. / Almo, S.C. / Enzyme Function Initiative (EFI) CitationJournal : To be published Title : Crystal Structure of an ABC transporter Solute Binding Protein from Agrobacterium vitis(Avis_5339, TARGET EFI-511225) bound with alpha-D-TagatopyranoseAuthors: Yadava, U. / Al Obaidi, N.F. / Morisco, L.L. / Benach, J. / Koss, J. / Wasserman, S.R. / Attonito, J.D. / Scott Glenn, A. / Chamala, S. / Chowdhury, S. / Lafleur, J. / Love, J. / Seidel, R.D. ... Authors : Yadava, U. / Al Obaidi, N.F. / Morisco, L.L. / Benach, J. / Koss, J. / Wasserman, S.R. / Attonito, J.D. / Scott Glenn, A. / Chamala, S. / Chowdhury, S. / Lafleur, J. / Love, J. / Seidel, R.D. / Whalen, K.L. / Gerlt, J.A. / Almo, S.C. / Enzyme Function Initiative (EFI) History Deposition Sep 4, 2015 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Sep 30, 2015 Provider : repository / Type : Initial releaseRevision 2.0 Nov 15, 2017 Group : Advisory / Atomic model / Derived calculationsCategory : atom_site / pdbx_struct_oper_list / pdbx_validate_close_contactItem : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_atom_id / _atom_site.label_atom_id / _pdbx_struct_oper_list.symmetry_operation / _pdbx_validate_close_contact.auth_seq_id_1 Revision 3.0 Jul 29, 2020 Group : Atomic model / Data collection / Derived calculationsCategory : atom_site / chem_comp ... atom_site / chem_comp / pdbx_chem_comp_identifier / struct_site / struct_site_gen Item : _atom_site.auth_atom_id / _atom_site.label_atom_id / _chem_comp.typeDescription : Carbohydrate remediation / Provider : repository / Type : RemediationRevision 3.1 Sep 27, 2023 Group : Data collection / Database references ... Data collection / Database references / Refinement description / Structure summary Category : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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