+Open data
-Basic information
Entry | Database: PDB / ID: 4rxg | ||||||
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Title | Fructose-6-phosphate aldolase Q59E from E.coli | ||||||
Components | Fructose-6-phosphate aldolase 1 | ||||||
Keywords | LYASE / Tim barrel / homodecamer / FSA / TalB | ||||||
Function / homology | Function and homology information fructose 6-phosphate aldolase activity / ketone catabolic process / Lyases; Carbon-carbon lyases; Aldehyde-lyases / fructose metabolic process / identical protein binding / cytoplasm Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.154 Å | ||||||
Authors | Stellmacher, L. / Sandalova, T. / Leptihn, S. / Schneider, G. / Sprenger, G.A. / Samland, A.K. | ||||||
Citation | Journal: ChemCatChem / Year: 2015 Title: Acid Base Catalyst Discriminates between a Fructose 6-Phosphate Aldolase and a Transaldolase Authors: Stellmacher, L. / Sandalova, T. / Leptihn, S. / Schneider, G. / Sprenger, G.A. / Samland, A.K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4rxg.cif.gz | 415 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4rxg.ent.gz | 341.1 KB | Display | PDB format |
PDBx/mmJSON format | 4rxg.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rx/4rxg ftp://data.pdbj.org/pub/pdb/validation_reports/rx/4rxg | HTTPS FTP |
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-Related structure data
Related structure data | 4rxfC 4rz4C 4rz5C 4rz6C 4s1fC 1l6wS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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-Components
#1: Protein | Mass: 23017.740 Da / Num. of mol.: 10 / Mutation: Q59E Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K12 / Gene: b0825, fsa, fsaA, JW5109, mipB, ybiZ / Plasmid: pUC18 / Production host: Escherichia coli (E. coli) / Strain (production host): DH5 alpha References: UniProt: P78055, Lyases; Carbon-carbon lyases; Aldehyde-lyases #2: Chemical | ChemComp-GOL / #3: Chemical | ChemComp-1PE / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.92 Å3/Da / Density % sol: 57.81 % |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-3 / Wavelength: 0.931 Å |
Detector | Type: ADSC QUANTUM 4r / Detector: CCD / Date: Jan 1, 2004 |
Radiation | Monochromator: diamond 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.931 Å / Relative weight: 1 |
Reflection | Resolution: 2.154→104.5 Å / Num. all: 145571 / Num. obs: 142189 / % possible obs: 99.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 5.8 % / Biso Wilson estimate: 24.5 Å2 / Rmerge(I) obs: 0.12 / Net I/σ(I): 10 |
Reflection shell | Resolution: 2.154→2.57 Å / Redundancy: 5.3 % / Rmerge(I) obs: 0.45 / Mean I/σ(I) obs: 3.4 / % possible all: 99.9 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 1L6W Resolution: 2.154→104.5 Å / Cor.coef. Fo:Fc: 0.944 / Cor.coef. Fo:Fc free: 0.919 / SU B: 6.009 / SU ML: 0.145 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.211 / ESU R Free: 0.179 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 24.767 Å2
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Refinement step | Cycle: LAST / Resolution: 2.154→104.5 Å
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Refine LS restraints |
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