- PDB-4qkg: Monomeric form of human LLT1, a ligand for NKR-P1 -
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基本情報
登録情報
データベース: PDB / ID: 4qkg
タイトル
Monomeric form of human LLT1, a ligand for NKR-P1
要素
C-type lectin domain family 2 member D
キーワード
IMMUNE SYSTEM / C-type lectin like fold / ligand for human receptor NKR-P1 / glycosylation / deglycosylated after the first GlcNac unit / anchored in membrane on cell surface
機能・相同性
機能・相同性情報
transmembrane signaling receptor activity / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / carbohydrate binding / cell surface receptor signaling pathway / external side of plasma membrane / cell surface / endoplasmic reticulum / membrane / plasma membrane 類似検索 - 分子機能
: / Natural killer cell receptor-like, C-type lectin-like domain / Mannose-Binding Protein A; Chain A / Mannose-Binding Protein A, subunit A / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) / C-type lectin-like/link domain superfamily / C-type lectin fold ...: / Natural killer cell receptor-like, C-type lectin-like domain / Mannose-Binding Protein A; Chain A / Mannose-Binding Protein A, subunit A / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) / C-type lectin-like/link domain superfamily / C-type lectin fold / Roll / Alpha Beta 類似検索 - ドメイン・相同性
C-type lectin domain family 2 member D 類似検索 - 構成要素
解像度: 1.95→40.96 Å / Cor.coef. Fo:Fc: 0.952 / SU B: 2.498 / SU ML: 0.073 / 交差検証法: throughout (except for the last cycle) / σ(F): 0 / ESU R: 0.149 立体化学のターゲット値: CCP4 STEREOCHEMISTRY LIBRARY, VERSION 6.4.0 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.247
500
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random
Rwork
0.1939
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all
0.20138
10529
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obs
0.20138
10029
99.71 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK