- PDB-4nav: Crystal structure of hypothetical protein XCC2798 from Xanthomona... -
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Basic information
Entry
Database: PDB / ID: 4nav
Title
Crystal structure of hypothetical protein XCC2798 from Xanthomonas campestris, Target EFI-508608
Components
HYPOTHETICAL PROTEIN XCC279Hypothesis
Keywords
HYDROLASE / Structural Genomics / Enzyme Function Initiative
Function / homology
Function and homology information
3-deoxy-manno-octulosonate-8-phosphatase / 3-deoxy-manno-octulosonate-8-phosphatase activity / lipopolysaccharide biosynthetic process / metal ion binding Similarity search - Function
KdsC family / haloacid dehalogenase-like hydrolase / HAD superfamily/HAD-like / HAD superfamily / HAD-like superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
Resolution: 2.69→78.01 Å / Cor.coef. Fo:Fc: 0.874 / Cor.coef. Fo:Fc free: 0.852 / SU B: 32.272 / SU ML: 0.306 / Cross valid method: THROUGHOUT / ESU R Free: 0.393 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.275
1095
5.2 %
RANDOM
Rwork
0.24358
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obs
0.24516
20128
96.61 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK