- PDB-4jvh: Structure of the star domain of quaking protein in complex with RNA -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 4jvh
Title
Structure of the star domain of quaking protein in complex with RNA
Components
Protein quaking
RNA (5'-R(*UP*UP*CP*AP*CP*UP*AP*AP*CP*AP*A)-3')
Keywords
RNA BINDING PROTEIN / STAR domain / RNA regulator / TRANSLATION
Function / homology
Function and homology information
muscle cell differentiation / long-chain fatty acid biosynthetic process / regulation of alternative mRNA splicing, via spliceosome / spermatid development / mRNA transport / vasculogenesis / myelination / RNA splicing / mRNA processing / SH3 domain binding ...muscle cell differentiation / long-chain fatty acid biosynthetic process / regulation of alternative mRNA splicing, via spliceosome / spermatid development / mRNA transport / vasculogenesis / myelination / RNA splicing / mRNA processing / SH3 domain binding / Signaling by BRAF and RAF1 fusions / regulation of translation / mRNA binding / synapse / positive regulation of gene expression / RNA binding / nucleus / cytoplasm Similarity search - Function
Protein quaking, putative nuclear localisation signal / Putative nuclear localisation signal of quaking / STAR protein, homodimerisation region / Homodimerisation region of STAR domain protein / K Homology domain, type 1 / KH domain / K Homology domain, type 1 / Ribosomal Protein S8; Chain: A, domain 1 / K Homology domain, type 1 superfamily / K Homology domain ...Protein quaking, putative nuclear localisation signal / Putative nuclear localisation signal of quaking / STAR protein, homodimerisation region / Homodimerisation region of STAR domain protein / K Homology domain, type 1 / KH domain / K Homology domain, type 1 / Ribosomal Protein S8; Chain: A, domain 1 / K Homology domain, type 1 superfamily / K Homology domain / K homology RNA-binding domain / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi