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Yorodumi- PDB-4icb: PROLINE CIS-TRANS ISOMERS IN CALBINDIN D9K OBSERVED BY X-RAY CRYS... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4icb | ||||||
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Title | PROLINE CIS-TRANS ISOMERS IN CALBINDIN D9K OBSERVED BY X-RAY CRYSTALLOGRAPHY | ||||||
Components | CALBINDIN D9K | ||||||
Keywords | CALCIUM-BINDING PROTEIN | ||||||
Function / homology | Function and homology information vitamin D binding / calcium-dependent protein binding / collagen-containing extracellular matrix / calcium ion binding / extracellular space / cytoplasm Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | ||||||
Authors | Svensson, L.A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1992 Title: Proline cis-trans isomers in calbindin D9k observed by X-ray crystallography. Authors: Svensson, L.A. / Thulin, E. / Forsen, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4icb.cif.gz | 29 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4icb.ent.gz | 18.9 KB | Display | PDB format |
PDBx/mmJSON format | 4icb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ic/4icb ftp://data.pdbj.org/pub/pdb/validation_reports/ic/4icb | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUE 43 HAS BEEN MODELLED AS BOTH CIS- (ALTERNATE CONFORMATION B) AND TRANS- (ALTERNATE CONFORMATION A) PROLINE. | |||||||||
Components on special symmetry positions |
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-Components
#1: Protein | Mass: 8641.751 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Organ: INTESTINE / References: UniProt: P02633 | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.05 Å3/Da / Density % sol: 39.89 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 8.7 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.6 Å / Rmerge(I) obs: 0.067 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.188 / Rfactor obs: 0.188 / Highest resolution: 1.6 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.6 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 10 Å / Num. reflection obs: 7350 / σ(F): 1 / Rfactor obs: 0.188 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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