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- PDB-4c40: The molecular recognition of kink turn structure by the L7Ae clas... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4c40 | |||||||||||||||||||||||
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Title | The molecular recognition of kink turn structure by the L7Ae class of proteins | |||||||||||||||||||||||
![]() | 5'-(*![]() ![]() ![]() Function / homology | ![]() ![]() Biological species | ![]() ![]() Method | ![]() ![]() ![]() ![]() Huang, L. / Lilley, D.M.J. | ![]() ![]() Title: The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins. Authors: Huang, L. / Lilley, D.M.J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 30.4 KB | Display | ![]() |
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PDB format | ![]() | 21.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 4bw0SC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: RNA chain | Mass: 6233.833 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: KINK TURN MOTIF / Source: (synth.) ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 69 % / Description: NONE |
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Crystal grow![]() | pH: 4 / Details: 3.5M SODIUM FORMATE, 0.1M SODIUM ACETATE PH 4.0 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PIXEL / Detector: PIXEL / Date: Jun 22, 2013 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.2→37.54 Å / Num. obs: 3827 / % possible obs: 99.9 % / Observed criterion σ(I): 3.17 / Redundancy: 10.2 % / Rmerge(I) obs: 0.09 / Net I/σ(I): 15.6 |
Reflection shell | Resolution: 2.2→2.28 Å / Redundancy: 10.6 % / Rmerge(I) obs: 0.76 / Mean I/σ(I) obs: 3.17 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 4BW0 Resolution: 2.2→37.5 Å / SU ML: 0.22 / σ(F): 1.34 / Phase error: 37.05
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 48 Å2 | ||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→37.5 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.2011→37.5432 Å
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Refinement TLS params. | Method: refined / Origin x: -23.3345 Å / Origin y: 41.5282 Å / Origin z: 49.2951 Å
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Refinement TLS group | Selection details: ALL |