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- PDB-3u8j: Crystal structure of the acetylcholine binding protein (AChBP) fr... -

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Basic information

Entry
Database: PDB / ID: 3u8j
TitleCrystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3531 (1-(pyridin-3-yl)-1,4-diazepane)
ComponentsAcetylcholine-binding protein
KeywordsAcetylcholine-binding protein/agonist / Lymnaea stagnalis / agonist / Ligand-bindig domain / Acetylcholine / Acetylcholine-binding protein / Acetylcholine-binding protein-agonist complex
Function / homology
Function and homology information


acetylcholine receptor activity / acetylcholine-gated monoatomic cation-selective channel activity / synaptic cleft / response to nicotine / neuron projection / synapse / membrane
Similarity search - Function
Acetylcholine Binding Protein; Chain: A, / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel ligand-binding domain superfamily / Neurotransmitter-gated ion-channel ligand binding domain / Distorted Sandwich / Ig-like domain profile. / Immunoglobulin-like domain / Mainly Beta
Similarity search - Domain/homology
1-(pyridin-3-yl)-1,4-diazepane / Acetylcholine-binding protein
Similarity search - Component
Biological speciesLymnaea stagnalis (great pond snail)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.35 Å
AuthorsRohde, L.A.H. / Ahring, P.K. / Jensen, M.L. / Nielsen, E.O. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpsoe, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
CitationJournal: J.Biol.Chem. / Year: 2012
Title: Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
Authors: Rohde, L.A. / Ahring, P.K. / Jensen, M.L. / Nielsen, E. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpse, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
History
DepositionOct 17, 2011Deposition site: RCSB / Processing site: RCSB
Revision 1.0Dec 14, 2011Provider: repository / Type: Initial release
Revision 1.1Sep 18, 2013Group: Database references
Revision 1.2Jul 29, 2020Group: Data collection / Derived calculations / Structure summary
Category: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_site / struct_site_gen
Item: _chem_comp.name / _chem_comp.type ..._chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role
Description: Carbohydrate remediation / Provider: repository / Type: Remediation
Revision 1.3Sep 13, 2023Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
B: Acetylcholine-binding protein
A: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
J: Acetylcholine-binding protein
I: Acetylcholine-binding protein
H: Acetylcholine-binding protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)241,19527
Polymers238,62510
Non-polymers2,57017
Water9,458525
1
B: Acetylcholine-binding protein
A: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)120,58314
Polymers119,3135
Non-polymers1,2709
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area14810 Å2
ΔGint-107 kcal/mol
Surface area41670 Å2
MethodPISA
2
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
J: Acetylcholine-binding protein
I: Acetylcholine-binding protein
H: Acetylcholine-binding protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)120,61213
Polymers119,3135
Non-polymers1,3008
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area14500 Å2
ΔGint-76 kcal/mol
Surface area40390 Å2
MethodPISA
Unit cell
Length a, b, c (Å)72.350, 114.430, 247.370
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-ID
11
21
31
41
51
61
71
81
91
101
12
22
32
42
52
62
72
82
92
102
13
23
33
43
53
63
73
83
93
103
14
24
34
44
54
64
74
84
94
15
25
35
45
55
65
75
85
95
105
16
26
36
46
56
66
76
86
96
106
17
27
37
47
57
67
77
87
97
18
28
38
48
58
68
78
88
98
108
19
29
39
49
59
69
79
89
99
110
210
310
410
510
610
710
810
910
1010
111
211
311
411
511
611
711
811
911
112
212
312
412
512
612
712
812
912
1012
113
213
313
413
513
613
713
813
913
114
214
314
414
514
614
714
814
914
1014

NCS domain segments:
Dom-IDComponent-IDEns-IDSelection details
111chain A and resid 1:12
211chain B and resid 1:12
311chain C and resid 1:12
411chain D and resid 1:12
511chain E and resid 1:12
611chain F and resid 1:12
711chain G and resid 1:12
811chain H and resid 1:12
911chain I and resid 1:12
1011chain J and resid 1:12
112chain A and resid 16:20
212chain B and resid 16:20
312chain C and resid 16:20
412chain D and resid 16:20
512chain E and resid 16:20
612chain F and resid 16:20
712chain G and resid 16:20
812chain H and resid 16:20
912chain I and resid 16:20
1012chain J and resid 16:20
113chain A and resid 26:42
213chain B and resid 26:42
313chain C and resid 26:42
413chain D and resid 26:42
513chain E and resid 26:42
613chain F and resid 26:42
713chain G and resid 26:42
813chain H and resid 26:42
913chain I and resid 26:42
1013chain J and resid 26:42
114chain A and resid 43
214chain B and resid 43
314chain C and resid 43
414chain D and resid 43
514chain E and resid 43
614chain F and resid 43
714chain G and resid 43
814chain H and resid 43
914chain I and resid 43
115chain A and resid 44:67
215chain B and resid 44:67
315chain C and resid 44:67
415chain D and resid 44:67
515chain E and resid 44:67
615chain F and resid 44:67
715chain G and resid 44:67
815chain H and resid 44:67
915chain I and resid 44:67
1015chain J and resid 44:67
116chain A and resid 70:130
216chain B and resid 70:130
316chain C and resid 70:130
416chain D and resid 70:130
516chain E and resid 70:130
616chain F and resid 70:130
716chain G and resid 70:130
816chain H and resid 70:130
916chain I and resid 70:130
1016chain J and resid 70:130
117chain A and resid 131
217chain B and resid 131
317chain C and resid 131
417chain D and resid 131
517chain E and resid 131
617chain G and resid 131
717chain H and resid 131
817chain I and resid 131
917chain J and resid 131
118chain A and resid 132:152
218chain B and resid 132:152
318chain C and resid 132:152
418chain D and resid 132:152
518chain E and resid 132:152
618chain F and resid 132:152
718chain G and resid 132:152
818chain H and resid 132:152
918chain I and resid 132:152
1018chain J and resid 132:152
119chain A and resid 153:154
219chain B and resid 153:154
319chain D and resid 153:154
419chain E and resid 153:154
519chain F and resid 153:154
619chain G and resid 153:154
719chain H and resid 153:154
819chain I and resid 153:154
919chain J and resid 153:154
1110chain A and resid 164:169
2110chain B and resid 164:169
3110chain C and resid 164:169
4110chain D and resid 164:169
5110chain E and resid 164:169
6110chain F and resid 164:169
7110chain G and resid 164:169
8110chain H and resid 164:169
9110chain I and resid 164:169
10110chain J and resid 164:169
1111chain A and resid 170
2111chain B and resid 170
3111chain C and resid 170
4111chain D and resid 170
5111chain E and resid 170
6111chain F and resid 170
7111chain G and resid 170
8111chain H and resid 170
9111chain J and resid 170
1112chain A and resid 171:189
2112chain B and resid 171:189
3112chain C and resid 171:189
4112chain D and resid 171:189
5112chain E and resid 171:189
6112chain F and resid 171:189
7112chain G and resid 171:189
8112chain H and resid 171:189
9112chain I and resid 171:189
10112chain J and resid 171:189
1113chain A and resid 190
2113chain B and resid 190
3113chain C and resid 190
4113chain D and resid 190
5113chain E and resid 190
6113chain G and resid 190
7113chain H and resid 190
8113chain I and resid 190
9113chain J and resid 190
1114chain A and resid 191:204
2114chain B and resid 191:204
3114chain C and resid 191:204
4114chain D and resid 191:204
5114chain E and resid 191:204
6114chain F and resid 191:204
7114chain G and resid 191:204
8114chain H and resid 191:204
9114chain I and resid 191:204
10114chain J and resid 191:204

NCS ensembles :
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14

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Components

#1: Protein
Acetylcholine-binding protein / ACh-binding protein / AchBP


Mass: 23862.523 Da / Num. of mol.: 10
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Lymnaea stagnalis (great pond snail) / Production host: Spodoptera frugiperda (fall armyworm) / Strain (production host): Sf9 / References: UniProt: P58154
#2: Chemical
ChemComp-09O / 1-(pyridin-3-yl)-1,4-diazepane


Mass: 177.246 Da / Num. of mol.: 10 / Source method: obtained synthetically / Formula: C10H15N3
#3: Chemical
ChemComp-SO4 / SULFATE ION / Sulfate


Mass: 96.063 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: SO4
#4: Sugar ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-Acetylglucosamine


Type: D-saccharide, beta linking / Mass: 221.208 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Formula: C8H15NO6
IdentifierTypeProgram
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0
#5: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 525 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.15 Å3/Da / Density % sol: 42.67 %
Crystal growTemperature: 293 K / pH: 8
Details: 50mM Tris, 1.9M Ammonium sulfate, 1% PEG 400, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: ESRF / Beamline: ID14-1 / Wavelength: 0.933
DetectorType: ADSC QUANTUM 210 / Detector: CCD / Date: Jan 1, 2010
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.933 Å / Relative weight: 1
ReflectionResolution: 2.35→44.88 Å / Num. obs: 83502 / % possible obs: 97.1 % / Redundancy: 3 % / Biso Wilson estimate: 23 Å2 / Rmerge(I) obs: 0.083 / Rsym value: 0.083 / Net I/σ(I): 9.1
Reflection shellResolution: 2.35→2.48 Å / Redundancy: 2.7 % / Rmerge(I) obs: 0.268 / Mean I/σ(I) obs: 2.9 / Rsym value: 0.268 / % possible all: 88.6

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Processing

Software
NameVersionClassificationNB
SCALA3.3.9data scaling
PHENIX1.6.4_486refinement
PDB_EXTRACT3.1data extraction
MOSFLMdata reduction
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: PDB ENTRY 1UW6: PENTAMER, CHAIN A-E
Resolution: 2.35→44.88 Å / Occupancy max: 1 / Occupancy min: 0.5 / SU ML: 0.31 / Isotropic thermal model: Restrained / σ(F): 1.4 / Phase error: 23.75 / Stereochemistry target values: MLHL
RfactorNum. reflection% reflection
Rfree0.258 1646 1.97 %
Rwork0.205 --
obs0.206 83459 96.5 %
all-86107 -
Solvent computationShrinkage radii: 0.95 Å / VDW probe radii: 1.2 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 21.75 Å2 / ksol: 0.36 e/Å3
Displacement parametersBiso mean: 27.37 Å2
Baniso -1Baniso -2Baniso -3
1-4.5502 Å2-0 Å2-0 Å2
2---2.705 Å2-0 Å2
3----1.8452 Å2
Refinement stepCycle: LAST / Resolution: 2.35→44.88 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms16172 0 174 525 16871
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00716740
X-RAY DIFFRACTIONf_angle_d1.0122794
X-RAY DIFFRACTIONf_dihedral_angle_d13.4826226
X-RAY DIFFRACTIONf_chiral_restr0.0622587
X-RAY DIFFRACTIONf_plane_restr0.0042926
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDNumberRefine-IDTypeRms dev position (Å)
11A104X-RAY DIFFRACTIONPOSITIONAL
12B104X-RAY DIFFRACTIONPOSITIONAL0.036
13C104X-RAY DIFFRACTIONPOSITIONAL0.034
14D104X-RAY DIFFRACTIONPOSITIONAL0.037
15E104X-RAY DIFFRACTIONPOSITIONAL0.039
16F104X-RAY DIFFRACTIONPOSITIONAL0.031
17G104X-RAY DIFFRACTIONPOSITIONAL0.036
18H104X-RAY DIFFRACTIONPOSITIONAL0.032
19I104X-RAY DIFFRACTIONPOSITIONAL0.036
110J104X-RAY DIFFRACTIONPOSITIONAL0.034
21A37X-RAY DIFFRACTIONPOSITIONAL
22B37X-RAY DIFFRACTIONPOSITIONAL0.044
23C37X-RAY DIFFRACTIONPOSITIONAL0.044
24D37X-RAY DIFFRACTIONPOSITIONAL0.035
25E37X-RAY DIFFRACTIONPOSITIONAL0.037
26F37X-RAY DIFFRACTIONPOSITIONAL0.031
27G37X-RAY DIFFRACTIONPOSITIONAL0.045
28H37X-RAY DIFFRACTIONPOSITIONAL0.035
29I37X-RAY DIFFRACTIONPOSITIONAL0.041
210J37X-RAY DIFFRACTIONPOSITIONAL0.033
31A129X-RAY DIFFRACTIONPOSITIONAL
32B129X-RAY DIFFRACTIONPOSITIONAL0.045
33C129X-RAY DIFFRACTIONPOSITIONAL0.05
34D129X-RAY DIFFRACTIONPOSITIONAL0.039
35E129X-RAY DIFFRACTIONPOSITIONAL0.047
36F129X-RAY DIFFRACTIONPOSITIONAL0.036
37G129X-RAY DIFFRACTIONPOSITIONAL0.055
38H129X-RAY DIFFRACTIONPOSITIONAL0.043
39I129X-RAY DIFFRACTIONPOSITIONAL0.044
310J129X-RAY DIFFRACTIONPOSITIONAL0.043
41A9X-RAY DIFFRACTIONPOSITIONAL
42B9X-RAY DIFFRACTIONPOSITIONAL0.067
43C9X-RAY DIFFRACTIONPOSITIONAL0.024
44D9X-RAY DIFFRACTIONPOSITIONAL0.022
45E9X-RAY DIFFRACTIONPOSITIONAL0.026
46F9X-RAY DIFFRACTIONPOSITIONAL0.041
47G9X-RAY DIFFRACTIONPOSITIONAL0.042
48H9X-RAY DIFFRACTIONPOSITIONAL0.044
49I9X-RAY DIFFRACTIONPOSITIONAL0.04
51A205X-RAY DIFFRACTIONPOSITIONAL
52B205X-RAY DIFFRACTIONPOSITIONAL0.046
53C205X-RAY DIFFRACTIONPOSITIONAL0.045
54D205X-RAY DIFFRACTIONPOSITIONAL0.038
55E205X-RAY DIFFRACTIONPOSITIONAL0.047
56F205X-RAY DIFFRACTIONPOSITIONAL0.046
57G205X-RAY DIFFRACTIONPOSITIONAL0.047
58H205X-RAY DIFFRACTIONPOSITIONAL0.045
59I205X-RAY DIFFRACTIONPOSITIONAL0.04
510J205X-RAY DIFFRACTIONPOSITIONAL0.051
61A463X-RAY DIFFRACTIONPOSITIONAL
62B463X-RAY DIFFRACTIONPOSITIONAL0.046
63C463X-RAY DIFFRACTIONPOSITIONAL0.077
64D455X-RAY DIFFRACTIONPOSITIONAL0.047
65E455X-RAY DIFFRACTIONPOSITIONAL0.047
66F463X-RAY DIFFRACTIONPOSITIONAL0.046
67G463X-RAY DIFFRACTIONPOSITIONAL0.049
68H463X-RAY DIFFRACTIONPOSITIONAL0.047
69I463X-RAY DIFFRACTIONPOSITIONAL0.048
610J463X-RAY DIFFRACTIONPOSITIONAL0.05
71A9X-RAY DIFFRACTIONPOSITIONAL
72B9X-RAY DIFFRACTIONPOSITIONAL0.034
73C9X-RAY DIFFRACTIONPOSITIONAL0.048
74D9X-RAY DIFFRACTIONPOSITIONAL0.031
75E9X-RAY DIFFRACTIONPOSITIONAL0.052
76G9X-RAY DIFFRACTIONPOSITIONAL0.035
77H9X-RAY DIFFRACTIONPOSITIONAL0.042
78I9X-RAY DIFFRACTIONPOSITIONAL0.014
79J9X-RAY DIFFRACTIONPOSITIONAL0.04
81A162X-RAY DIFFRACTIONPOSITIONAL
82B162X-RAY DIFFRACTIONPOSITIONAL0.046
83C162X-RAY DIFFRACTIONPOSITIONAL0.05
84D162X-RAY DIFFRACTIONPOSITIONAL0.047
85E162X-RAY DIFFRACTIONPOSITIONAL0.04
86F162X-RAY DIFFRACTIONPOSITIONAL0.042
87G162X-RAY DIFFRACTIONPOSITIONAL0.048
88H162X-RAY DIFFRACTIONPOSITIONAL0.045
89I162X-RAY DIFFRACTIONPOSITIONAL0.046
810J162X-RAY DIFFRACTIONPOSITIONAL0.048
91A15X-RAY DIFFRACTIONPOSITIONAL
92B15X-RAY DIFFRACTIONPOSITIONAL0.037
93D15X-RAY DIFFRACTIONPOSITIONAL0.057
94E15X-RAY DIFFRACTIONPOSITIONAL0.055
95F15X-RAY DIFFRACTIONPOSITIONAL0.067
96G15X-RAY DIFFRACTIONPOSITIONAL0.1
97H15X-RAY DIFFRACTIONPOSITIONAL0.034
98I15X-RAY DIFFRACTIONPOSITIONAL0.086
99J15X-RAY DIFFRACTIONPOSITIONAL0.077
101A56X-RAY DIFFRACTIONPOSITIONAL
102B56X-RAY DIFFRACTIONPOSITIONAL0.041
103C56X-RAY DIFFRACTIONPOSITIONAL0.039
104D56X-RAY DIFFRACTIONPOSITIONAL0.041
105E56X-RAY DIFFRACTIONPOSITIONAL0.039
106F56X-RAY DIFFRACTIONPOSITIONAL0.042
107G56X-RAY DIFFRACTIONPOSITIONAL0.044
108H56X-RAY DIFFRACTIONPOSITIONAL0.041
109I56X-RAY DIFFRACTIONPOSITIONAL0.048
1010J56X-RAY DIFFRACTIONPOSITIONAL0.037
111A11X-RAY DIFFRACTIONPOSITIONAL
112B11X-RAY DIFFRACTIONPOSITIONAL0.104
113C11X-RAY DIFFRACTIONPOSITIONAL0.041
114D11X-RAY DIFFRACTIONPOSITIONAL0.108
115E11X-RAY DIFFRACTIONPOSITIONAL0.078
116F11X-RAY DIFFRACTIONPOSITIONAL0.056
117G11X-RAY DIFFRACTIONPOSITIONAL0.034
118H11X-RAY DIFFRACTIONPOSITIONAL0.069
119J11X-RAY DIFFRACTIONPOSITIONAL0.045
121A150X-RAY DIFFRACTIONPOSITIONAL
122B150X-RAY DIFFRACTIONPOSITIONAL0.052
123C150X-RAY DIFFRACTIONPOSITIONAL0.056
124D150X-RAY DIFFRACTIONPOSITIONAL0.048
125E150X-RAY DIFFRACTIONPOSITIONAL0.046
126F150X-RAY DIFFRACTIONPOSITIONAL0.048
127G150X-RAY DIFFRACTIONPOSITIONAL0.043
128H150X-RAY DIFFRACTIONPOSITIONAL0.043
129I150X-RAY DIFFRACTIONPOSITIONAL0.051
1210J150X-RAY DIFFRACTIONPOSITIONAL0.046
131A9X-RAY DIFFRACTIONPOSITIONAL
132B9X-RAY DIFFRACTIONPOSITIONAL0.059
133C9X-RAY DIFFRACTIONPOSITIONAL0.028
134D9X-RAY DIFFRACTIONPOSITIONAL0.018
135E9X-RAY DIFFRACTIONPOSITIONAL0.027
136G9X-RAY DIFFRACTIONPOSITIONAL0.03
137H9X-RAY DIFFRACTIONPOSITIONAL0.042
138I9X-RAY DIFFRACTIONPOSITIONAL0.082
139J9X-RAY DIFFRACTIONPOSITIONAL0.089
141A119X-RAY DIFFRACTIONPOSITIONAL
142B119X-RAY DIFFRACTIONPOSITIONAL0.045
143C119X-RAY DIFFRACTIONPOSITIONAL0.045
144D119X-RAY DIFFRACTIONPOSITIONAL0.047
145E119X-RAY DIFFRACTIONPOSITIONAL0.043
146F119X-RAY DIFFRACTIONPOSITIONAL0.046
147G119X-RAY DIFFRACTIONPOSITIONAL0.043
148H119X-RAY DIFFRACTIONPOSITIONAL0.044
149I119X-RAY DIFFRACTIONPOSITIONAL0.044
1410J119X-RAY DIFFRACTIONPOSITIONAL0.045
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.35-2.41910.33561140.2665949X-RAY DIFFRACTION85
2.4191-2.49720.35691230.266418X-RAY DIFFRACTION92
2.4972-2.58650.341500.24526605X-RAY DIFFRACTION95
2.5865-2.690.2771390.23556770X-RAY DIFFRACTION97
2.69-2.81240.28471240.21116934X-RAY DIFFRACTION99
2.8124-2.96070.2641270.21396943X-RAY DIFFRACTION99
2.9607-3.14610.29061450.20896981X-RAY DIFFRACTION99
3.1461-3.38890.27841310.20516986X-RAY DIFFRACTION99
3.3889-3.72980.22731270.19446982X-RAY DIFFRACTION99
3.7298-4.26920.22891480.17677073X-RAY DIFFRACTION99
4.2692-5.37730.20061710.16756999X-RAY DIFFRACTION99
5.3773-44.88610.23861470.20777173X-RAY DIFFRACTION96
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.0129-0.0040.01350.0049-0.00510.01450.2771-0.02680.0827-0.1012-0.04060.12930.1813-0.31430.00030.2059-0.0920.04480.2017-0.00280.1276-33.9973-10.06439.9851
20.0059-0.0046-0.01080.02290.01420.02170.2270.28980.03690.1695-0.0878-0.1539-0.1137-0.10420.00090.33610.0347-0.00680.2771-0.14230.2562-3.0084-10.42079.7858
30.50490.34840.02560.3218-0.06860.093-0.28290.3052-0.09990.04480.1735-0.0976-0.07880.11010.01090.45680.1250.04450.38090.16520.08336.8651-6.238338.8057
40.0893-0.0412-0.09450.02360.04030.1024-0.4166-0.0509-0.07710.0669-0.5799-0.1714-0.0594-0.1418-0.00520.15690.0483-0.14960.3059-0.11390.4439-17.98-3.573356.8447
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890.68170.3805-0.37020.44350.05650.5161-0.0222-0.2188-0.06240.48-0.10020.08140.3104-0.2252-0.00550.34230.0688-0.02230.2020.03780.1516-66.340217.3962112.3902
901.2136-0.4094-0.37711.79991.17821.01890.04810.1089-0.1869-0.0316-0.3550.2774-0.0199-0.2107-0.14120.02540.0032-0.00950.07620.00740.142-80.655721.278684.5006
911.7836-0.1638-0.74020.3151-0.11560.4181-0.1170.3676-0.1436-0.09320.19050.1133-0.0063-0.3762-0.04660.0462-0.02050.00250.32150.0910.0479-30.526529.32923.5375
920.4955-0.61150.09612.4721-0.83650.3177-0.01010.0603-0.0784-0.0594-0.04290.09030.03850.09090.2229-0.07070.03220.05540.2278-0.01230.187-0.909829.37156.8288
930.1270.1327-0.01380.15-0.0890.4678-0.06130.48360.3270.00070.07870.1804-0.0250.52030.00460.2908-0.1517-0.05030.29170.00870.18245.237333.572335.8676
940.62190.45370.05123.8159-0.04180.00640.0118-0.23220.07480.68630.2442-0.06740.260.294-0.00370.16710.00180.04450.2162-0.0776-0.0147-21.082635.726350.3892
952.88942.96250.81196.57743.54332.30480.2389-0.7718-0.75880.4849-0.30050.1291-0.0906-0.2049-0.33420.12130.1312-0.08810.47060.03380.0972-43.292333.028430.5545
960.3743-0.53390.17271.3318-0.88720.80080.6562-0.17510.81530.2662-0.6513-0.6590.07921.1574-0.02220.39270.0729-0.0160.36220.00520.3142-36.23699.082768.9443
970.2346-0.143-0.02470.0920.04120.1520.1726-0.67040.56010.6787-0.1541-0.66190.14210.1490.00260.31280.1023-0.01510.34780.02310.2544-30.94345.045898.3704
980.27620.07390.11850.0715-0.0190.0991-0.14590.00981.11240.47410.14730.2556-0.1631-0.22890.0010.86210.10560.10040.33050.03850.2462-57.68623.2583111.965
990.0420.03050.01010.0389-0.01260.0956-0.1186-0.23880.71320.30230.02080.5098-0.1386-1.10120.00250.27950.03340.14050.3805-0.05850.5512-79.32316.153891.0751
1001.7608-1.71891.08322.5317-1.62831.049-0.07330.44760.0634-0.5358-0.26460.394-0.17070.448-0.10790.198-0.018-0.0840.2477-0.12990.1504-65.91639.832364.4024
1011.2126-0.521-0.76841.73540.28071.30390.18380.1565-0.0567-0.6057-0.06410.01620.316-0.2682-0.04180.2560.0124-0.05510.0510.05130.1052-20.951330.9055-2.9154
1020.6156-0.2708-0.12230.45360.53460.71940.2075-0.35030.15080.47880.06220.0215-0.35070.41540.06150.2102-0.00210.05410.17510.14560.02188.050732.79513.4089
1030.53640.2292-1.09920.4729-0.67092.35710.067-0.23810.1794-0.0419-0.18470.08180.380.4852-0.01840.15980.0152-0.04460.0939-0.02010.07911.151337.386345.793
1044.3511-1.1451-0.67623.4018-1.35730.8643-0.1094-0.48450.40570.65260.2001-0.1364-0.3119-0.1493-0.00760.11750.0089-0.05420.2406-0.02770.0563-32.452638.149449.6374
1052.51540.97281.48790.95910.75173.13760.30420.1039-0.68970.52650.3755-0.0209-0.3969-0.52620.10080.25690.02740.04940.1030.02370.214-46.058634.089119.3567
1060.8556-0.39490.67870.3999-0.37850.55780.16020.5892-0.5164-0.18840.0088-0.26960.20380.21440.00050.16820.0501-0.04420.1832-0.05650.2362-43.79137.836760.259
1070.0402-0.0613-0.02050.14460.08970.10580.1960.2896-0.1004-0.14240.2740.72670.050.0220.00160.38150.0565-0.16120.19580.02470.2954-25.38023.903288.1447
1080.08540.0025-0.08720.00610.0110.1089-0.5944-0.1082-0.22590.69830.1242-0.61350.56-0.0176-01.0010.08610.00140.12770.15470.3822-46.60680.4871114.1893
1090.0284-0.01810.06060.07610.06510.2880.2597-0.204-0.2669-0.4067-0.00150.14170.0115-0.18760.00850.7615-0.03510.27180.1558-0.10610.4312-77.96242.1136101.7788
1101.2906-0.09240.18940.5552-0.11340.66940.24420.24090.2959-0.4774-0.16080.36710.18990.2049-0.0380.15860.0915-0.08420.0505-0.0380.1807-76.32466.700568.6002
1112.2206-1.29890.39030.7602-0.22860.06890.06570.2736-0.33920.1505-0.14030.05890.08810.2291-0.02250.17610.0635-0.06330.25440.06010.0932-4.880316.5225-3.9208
1120.7679-0.7490.14020.7333-0.15190.09370.04810.97350.0791-0.0555-0.22790.0373-0.05990.38960.14450.0634-0.0551-0.10860.55270.12050.169615.623121.103229.8981
1132.61720.9708-0.19222.1217-0.86330.37020.3186-0.37670.0899-0.249-0.11590.22120.0621-0.1760.06140.17440.044-0.01830.17020.04020.0426-10.481525.425459.4961
1140.46430.6367-0.30781.2766-0.83040.61570.4746-0.87940.3810.7401-0.0230.8318-0.3608-0.11310.04140.3-0.0906-0.04710.3007-0.04670.2161-47.32423.35344.5665
1150.65130.9110.70532.54641.8961.4151-0.1116-0.28970.0752-0.2823-0.34650.0498-0.4181-0.4814-0.25150.5749-0.0817-0.2520.44190.18530.0914-43.863617.99825.1463
1161.497-0.90391.17241.5485-0.90621.599-0.11150.4812-0.41620.0679-0.5086-0.11070.59880.2873-0.07740.31390.11150.07430.1461-0.05040.1361-58.505822.805455.2058
1170.48350.31410.20390.21380.16980.2320.5975-0.78310.1069-0.4438-0.1597-0.46240.07290.29480.01520.36660.09460.14730.3808-0.02910.2731-23.514120.032473.9142
1182.84412.44291.96253.58391.63881.3556-0.1587-0.42670.80420.3736-0.34140.0309-0.0299-0.7487-0.10250.6380.1668-0.1980.2820.09580.2841-30.447514.7498113.0516
1190.0221-0.0119-0.00820.01370.00190.004-0.41170.65090.0310.4784-0.17270.13240.1027-0.66360.00180.7645-0.16180.22750.56520.0170.2086-70.194313.8817118.1223
1200.397-0.69610.0744.15273.6244.81810.15630.36690.0887-0.3786-0.39040.3311-0.62530.1154-0.16240.1618-0.01120.13120.1715-0.11420.2802-87.560718.875682.4495
1210.7948-1.09070.26762.2520.35460.73780.02070.01740.1177-0.00110.0176-0.2103-0.2916-0.0660.01480.1219-00.01480.16490.07650.0422-13.273325.4146-0.2048
1220.3070.1055-0.50270.5824-0.1320.81220.2161-0.03870.04410.19170.11170.5013-0.02390.24740.1286-0.0188-0.10740.00310.2238-0.00750.13688.570828.314722.1839
1230.67830.2248-0.06190.17430.24930.74670.0478-0.00010.26760.00020.00460.2354-0.331-0.09010.02780.1265-0.0234-0.04410.09920.0320.1308-6.397532.327649.6232
1240.44780.46520.06370.75570.00720.15360.0121-0.15950.1362-0.09360.07770.2447-0.0533-0.11140.0090.03160.03370.00670.20030.0610.1357-37.665731.639844.4218
1250.9271-0.3934-0.87311.53320.7782.12450.2466-0.18810.16970.23790.0139-0.1477-0.2038-0.34870.4193-0.0790.0519-0.15270.11470.0874-0.0431-41.800827.503413.4076
1261.04020.3174-0.23470.4833-0.10510.1618-0.04040.1459-0.17260.1944-0.093-0.07610.13060.0220.02270.13980.0450.04440.158-0.0052-0.0011-51.792413.565360.8339
1270.69990.14450.19820.34850.02390.69410.0446-0.0811-0.2770.0144-0.00910.06140.46090.176-0.04140.2080.0631-0.0770.1832-0.06270.1404-27.764810.614681.3899
1281.17810.5688-0.62980.5274-0.11190.4727-0.4755-0.3883-0.8219-0.48710.0496-0.69030.39040.0827-0.00730.50490.0375-0.04620.10620.12670.2762-39.94936.7536110.4334
1290.9576-0.27150.27850.13790.00910.1959-0.0617-0.2753-0.54920.03930.0659-0.24660.3932-0.19430.00740.5851-0.06860.15810.19870.0050.1714-71.66087.0836107.3244
1300.4130.13160.21870.4444-0.09980.26890.0450.0879-0.31980.2495-0.24730.17110.2008-0.1503-0.00070.1180.0028-0.01180.1226-0.01890.2036-78.92511.293976.8862
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain A and resid 1:2
2X-RAY DIFFRACTION2chain B and resid 1:2
3X-RAY DIFFRACTION3chain C and resid 1:2
4X-RAY DIFFRACTION4chain D and resid 1:2
5X-RAY DIFFRACTION5chain E and resid 1:2
6X-RAY DIFFRACTION6chain F and resid 1:2
7X-RAY DIFFRACTION7chain G and resid 1:2
8X-RAY DIFFRACTION8chain H and resid 1:2
9X-RAY DIFFRACTION9chain I and resid 1:2
10X-RAY DIFFRACTION10chain J and resid 1:2
11X-RAY DIFFRACTION11chain A and resid 4:12
12X-RAY DIFFRACTION12chain B and resid 4:12
13X-RAY DIFFRACTION13chain C and resid 4:12
14X-RAY DIFFRACTION14chain D and resid 4:12
15X-RAY DIFFRACTION15chain E and resid 4:12
16X-RAY DIFFRACTION16chain F and resid 4:12
17X-RAY DIFFRACTION17chain G and resid 4:12
18X-RAY DIFFRACTION18chain H and resid 4:12
19X-RAY DIFFRACTION19chain I and resid 4:12
20X-RAY DIFFRACTION20chain J and resid 4:12
21X-RAY DIFFRACTION21chain A and resid 16:20
22X-RAY DIFFRACTION22chain B and resid 16:20
23X-RAY DIFFRACTION23chain C and resid 16:20
24X-RAY DIFFRACTION24chain D and resid 16:20
25X-RAY DIFFRACTION25chain E and resid 16:20
26X-RAY DIFFRACTION26chain F and resid 16:20
27X-RAY DIFFRACTION27chain G and resid 16:20
28X-RAY DIFFRACTION28chain H and resid 16:20
29X-RAY DIFFRACTION29chain I and resid 16:20
30X-RAY DIFFRACTION30chain J and resid 16:20
31X-RAY DIFFRACTION31chain A and resid 26:42
32X-RAY DIFFRACTION32chain B and resid 26:42
33X-RAY DIFFRACTION33chain C and resid 26:42
34X-RAY DIFFRACTION34chain D and resid 26:42
35X-RAY DIFFRACTION35chain E and resid 26:42
36X-RAY DIFFRACTION36chain F and resid 26:42
37X-RAY DIFFRACTION37chain G and resid 26:42
38X-RAY DIFFRACTION38chain H and resid 26:42
39X-RAY DIFFRACTION39chain I and resid 26:42
40X-RAY DIFFRACTION40chain J and resid 26:42
41X-RAY DIFFRACTION41chain A and resid 45:47
42X-RAY DIFFRACTION42chain B and resid 45:47
43X-RAY DIFFRACTION43chain C and resid 45:47
44X-RAY DIFFRACTION44chain D and resid 45:47
45X-RAY DIFFRACTION45chain E and resid 45:47
46X-RAY DIFFRACTION46chain F and resid 45:47
47X-RAY DIFFRACTION47chain G and resid 45:47
48X-RAY DIFFRACTION48chain H and resid 45:47
49X-RAY DIFFRACTION49chain I and resid 45:47
50X-RAY DIFFRACTION50chain J and resid 45:47
51X-RAY DIFFRACTION51chain A and resid 62:67
52X-RAY DIFFRACTION52chain B and resid 62:67
53X-RAY DIFFRACTION53chain C and resid 62:67
54X-RAY DIFFRACTION54chain D and resid 62:67
55X-RAY DIFFRACTION55chain E and resid 62:67
56X-RAY DIFFRACTION56chain F and resid 62:67
57X-RAY DIFFRACTION57chain G and resid 62:67
58X-RAY DIFFRACTION58chain H and resid 62:67
59X-RAY DIFFRACTION59chain I and resid 62:67
60X-RAY DIFFRACTION60chain J and resid 62:67
61X-RAY DIFFRACTION61chain A and resid 70:119
62X-RAY DIFFRACTION62chain B and resid 70:119
63X-RAY DIFFRACTION63chain C and resid 70:119
64X-RAY DIFFRACTION64chain D and resid 70:119
65X-RAY DIFFRACTION65chain E and resid 70:119
66X-RAY DIFFRACTION66chain F and resid 70:119
67X-RAY DIFFRACTION67chain G and resid 70:119
68X-RAY DIFFRACTION68chain H and resid 70:119
69X-RAY DIFFRACTION69chain I and resid 70:119
70X-RAY DIFFRACTION70chain J and resid 70:119
71X-RAY DIFFRACTION71chain A and resid 121:128
72X-RAY DIFFRACTION72chain B and resid 121:128
73X-RAY DIFFRACTION73chain C and resid 121:128
74X-RAY DIFFRACTION74chain D and resid 121:128
75X-RAY DIFFRACTION75chain E and resid 121:128
76X-RAY DIFFRACTION76chain F and resid 121:128
77X-RAY DIFFRACTION77chain G and resid 121:128
78X-RAY DIFFRACTION78chain H and resid 121:128
79X-RAY DIFFRACTION79chain I and resid 121:128
80X-RAY DIFFRACTION80chain J and resid 121:128
81X-RAY DIFFRACTION81chain A and resid 133:152
82X-RAY DIFFRACTION82chain B and resid 133:152
83X-RAY DIFFRACTION83chain C and resid 133:152
84X-RAY DIFFRACTION84chain D and resid 133:152
85X-RAY DIFFRACTION85chain E and resid 133:152
86X-RAY DIFFRACTION86chain F and resid 133:152
87X-RAY DIFFRACTION87chain G and resid 133:152
88X-RAY DIFFRACTION88chain H and resid 133:152
89X-RAY DIFFRACTION89chain I and resid 133:152
90X-RAY DIFFRACTION90chain J and resid 133:152
91X-RAY DIFFRACTION91chain A and resid 164:169
92X-RAY DIFFRACTION92chain B and resid 164:169
93X-RAY DIFFRACTION93chain C and resid 164:169
94X-RAY DIFFRACTION94chain D and resid 164:169
95X-RAY DIFFRACTION95chain E and resid 164:169
96X-RAY DIFFRACTION96chain F and resid 164:169
97X-RAY DIFFRACTION97chain G and resid 164:169
98X-RAY DIFFRACTION98chain H and resid 164:169
99X-RAY DIFFRACTION99chain I and resid 164:169
100X-RAY DIFFRACTION100chain J and resid 164:169
101X-RAY DIFFRACTION101chain A and resid 171:177
102X-RAY DIFFRACTION102chain B and resid 171:177
103X-RAY DIFFRACTION103chain C and resid 171:177
104X-RAY DIFFRACTION104chain D and resid 171:177
105X-RAY DIFFRACTION105chain E and resid 171:177
106X-RAY DIFFRACTION106chain F and resid 171:177
107X-RAY DIFFRACTION107chain G and resid 171:177
108X-RAY DIFFRACTION108chain H and resid 171:177
109X-RAY DIFFRACTION109chain I and resid 171:177
110X-RAY DIFFRACTION110chain J and resid 171:177
111X-RAY DIFFRACTION111chain A and resid 179:183
112X-RAY DIFFRACTION112chain B and resid 179:183
113X-RAY DIFFRACTION113chain C and resid 179:183
114X-RAY DIFFRACTION114chain D and resid 179:183
115X-RAY DIFFRACTION115chain E and resid 179:183
116X-RAY DIFFRACTION116chain F and resid 179:183
117X-RAY DIFFRACTION117chain G and resid 179:183
118X-RAY DIFFRACTION118chain H and resid 179:183
119X-RAY DIFFRACTION119chain I and resid 179:183
120X-RAY DIFFRACTION120chain J and resid 179:183
121X-RAY DIFFRACTION121chain A and resid 191:204
122X-RAY DIFFRACTION122chain B and resid 191:204
123X-RAY DIFFRACTION123chain C and resid 191:204
124X-RAY DIFFRACTION124chain D and resid 191:204
125X-RAY DIFFRACTION125chain E and resid 191:204
126X-RAY DIFFRACTION126chain F and resid 191:204
127X-RAY DIFFRACTION127chain G and resid 191:204
128X-RAY DIFFRACTION128chain H and resid 191:204
129X-RAY DIFFRACTION129chain I and resid 191:204
130X-RAY DIFFRACTION130chain J and resid 191:204

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