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- PDB-3rue: Alternative analogs as viable substrates of UDP-hexose 4-epimerases -
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Open data
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Basic information
Entry | Database: PDB / ID: 3rue | ||||||
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Title | Alternative analogs as viable substrates of UDP-hexose 4-epimerases | ||||||
![]() | WbgU | ||||||
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Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Bhatt, V.S. / Guan, W. / Wang, P.G. | ||||||
![]() | ![]() Title: Alternative analogs as viable substrates of UDP-hexose 4-epimerases Authors: Bhatt, V.S. / Guan, W. / Wang, P.G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 278.7 KB | Display | ![]() |
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PDB format | ![]() | 226.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 3rudC ![]() 3rufC ![]() 3ruhC ![]() 3lu1S C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 39822.109 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-NAD / ![]() #3: Chemical | ChemComp-UNL / Num. of mol.: 4 / Source method: obtained synthetically #4: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.53 Å3/Da / Density % sol: 51.32 % |
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Crystal grow![]() | Temperature: 300 K / Method: microbatch under oil / pH: 6.5 Details: 25% PEG 3350, 0.2 M Ammonium Sulfate, 200 mM Bis Tris Propane pH 6.5 , microbatch under oil, temperature 300K |
-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
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Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Apr 19, 2010 |
Radiation | Monochromator: Si / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.8→75.5 Å / Num. obs: 36103 |
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Processing
Software |
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Refinement | Method to determine structure![]() ![]() Starting model: 3LU1 Resolution: 2.8→75.5 Å / Cor.coef. Fo:Fc: 0.924 / Cor.coef. Fo:Fc free: 0.903 / SU B: 0.008 / SU ML: 0 / Cross valid method: THROUGHOUT / ESU R Free: 0.417 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||
Displacement parameters | Biso mean: 75.758 Å2
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Refinement step | Cycle: LAST / Resolution: 2.8→75.5 Å
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LS refinement shell | Resolution: 2.803→2.875 Å / Total num. of bins used: 20
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