- PDB-3fm1: Crystal Structure Analysis of Fungal Versatile Peroxidase from Pl... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 3fm1
Title
Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii
Components
Versatile peroxidase VPL2
Keywords
OXIDOREDUCTASE / CLASS II (FUNGAL) PEROXIDASES / protoporphyrin IX / ELECTRON TRANSFER / LIGNIN PEROXIDASE / LIGNIN DEGRADATION / MANGANESE PEROXIDASE / MN-INDEPENDENT OXIDATION PHENOLIC NON-PHENOLIC AROMATICS / MNII OXIDATION / PEROXIDASE / POLYVALENT PEROXIDASE / Calcium / Heme / Hydrogen peroxide / Iron / Manganese / Metal-binding / Organic radical / Secreted / Zymogen
Function / homology
Function and homology information
versatile peroxidase / reactive-black-5:hydrogen-peroxide oxidoreductase activity / manganese peroxidase activity / lignin catabolic process / response to reactive oxygen species / hydrogen peroxide catabolic process / cellular response to oxidative stress / heme binding / extracellular region / metal ion binding Similarity search - Function
Mass: 18.015 Da / Num. of mol.: 752 / Source method: isolated from a natural source / Formula: H2O
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Details
Sequence details
THERE IS A CONFLICT BETWEEN THE REPORTED SEQUENCE AND THE DATABASE REFERENCE SEQUENCE. THIS CAN BE ...THERE IS A CONFLICT BETWEEN THE REPORTED SEQUENCE AND THE DATABASE REFERENCE SEQUENCE. THIS CAN BE CALLED AS SPONTANEITY MUTATION. THE DEPOSITOR PREPARED THE TARGET PROTEIN AS WILD TYPE, BUT IN THE STRUCTURE ONE (SILENT) MUTATION WAS FOUND.
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 2.91 Å3/Da / Density % sol: 57.71 %
Crystal grow
Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 9.0mg/ml protein in 10mM Na-tartrate pH 5.5, 17% PEG 10000, 200mM Zn-acetate, 100mM Na-cacodylate pH 6.5; Crystals were soaked with Mn2+; VAPOR DIFFUSION, HANGING DROP, temperature 298K
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