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Open data
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Basic information
Entry | Database: PDB / ID: 3.0E+21 | ||||||
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Title | Crystal structure of FAF-1 UBA Domain | ||||||
![]() | FAS-associated factor 1 | ||||||
![]() | ![]() ![]() ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Park, J.K. / Kim, E.E. | ||||||
![]() | ![]() Title: Crystal structure of FAF-1 UBA Domain Authors: Park, J.K. / Kim, E.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 19.2 KB | Display | ![]() |
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PDB format | ![]() | 11.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2damS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 4934.514 Da / Num. of mol.: 1 / Fragment: Ubiquitin-associated Domain, UNP residues 5-47 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 38.65 % |
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Crystal grow![]() | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 25% PEG 3350, 0.2M ammonium nitrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Jun 23, 2007 / Details: mirrors |
Radiation | Monochromator: wiggler / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.73→19.61 Å / Num. obs: 4463 / % possible obs: 98.2 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 23 Å2 / Rmerge(I) obs: 0.061 |
Reflection shell | Resolution: 1.73→1.79 Å / Rmerge(I) obs: 0.155 / Mean I/σ(I) obs: 6.72 / % possible all: 96.8 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 2DAM Resolution: 1.73→19.61 Å / Rfactor Rfree error: 0.014 / Data cutoff high absF: 233801.07 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 56.4121 Å2 / ksol: 0.379249 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 26.8 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.73→19.61 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.73→1.84 Å / Rfactor Rfree error: 0.037 / Total num. of bins used: 6
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Xplor file |
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