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- PDB-3dr2: Structural and Functional Analyses of XC5397 from Xanthomonas cam... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3dr2 | ||||||
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Title | Structural and Functional Analyses of XC5397 from Xanthomonas campestris: A Gluconolactonase Important in Glucose Secondary Metabolic Pathways | ||||||
![]() | Exported gluconolactonase | ||||||
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Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chen, C.-N. / Chin, K.-H. / Wang, A.H.-J. / Chou, S.H. | ||||||
![]() | ![]() Title: The First Crystal Structure of Gluconolactonase Important in the Glucose Secondary Metabolic Pathways Authors: Chen, C.-N. / Chin, K.-H. / Wang, A.H.-J. / Chou, S.-H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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PDBx/mmCIF format | ![]() | 135.8 KB | Display | ![]() |
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PDB format | ![]() | 110.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 33272.121 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: 17 / Production host: ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-CA / #3: Water | ChemComp-HOH / | ![]() Sequence details | A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. THIS SEQUENCE WILL BE ...A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.63 Å3/Da / Density % sol: 53.17 % |
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Crystal grow![]() | Temperature: 297 K / Method: vapor diffusion / pH: 8 Details: 0.1M imidazole pH 8.0, 0.25M Ca(OAc)2, 15% PEG 3350, VAPOR DIFFUSION, temperature 297K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Jan 1, 2007 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.61→30 Å / Num. obs: 90819 / % possible obs: 97 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 4.7 % / Biso Wilson estimate: 17 Å2 / Rmerge(I) obs: 0.29 / Rsym value: 0.038 / Net I/σ(I): 22.9 | ||||||||||||
Reflection shell | Resolution: 1.61→1.67 Å / Redundancy: 4.7 % / Rmerge(I) obs: 0.29 / Mean I/σ(I) obs: 22.9 / Num. unique all: 85371 / Rsym value: 0.038 / % possible all: 97 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Bsol: 41.727 Å2 | ||||||||||||||||||||||||||||
Displacement parameters | Biso max: 38.67 Å2 / Biso mean: 21.521 Å2 / Biso min: 1 Å2
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Refinement step | Cycle: LAST / Resolution: 1.67→26.78 Å
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Refine LS restraints |
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