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- PDB-3cox: CRYSTAL STRUCTURE OF CHOLESTEROL OXIDASE COMPLEXED WITH A STEROID... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3cox | |||||||||
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Title | CRYSTAL STRUCTURE OF CHOLESTEROL OXIDASE COMPLEXED WITH A STEROID SUBSTRATE. IMPLICATIONS FOR FAD DEPENDENT ALCOHOL OXIDASES | |||||||||
![]() | CHOLESTEROL OXIDASE![]() | |||||||||
![]() | OXIDOREDUCTASE(OXYGEN RECEPTOR) | |||||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Vrielink, A. / Li, J. / Brick, P. / Blow, D.M. | |||||||||
![]() | ![]() Title: Crystal structure of cholesterol oxidase complexed with a steroid substrate: implications for flavin adenine dinucleotide dependent alcohol oxidases. Authors: Li, J. / Vrielink, A. / Brick, P. / Blow, D.M. #1: ![]() Title: Crystal Structure of Cholesterol Oxidase from Brevibacterium Sterolicum Refined at 1.8 Angstroms Resolution Authors: Vrielink, A. / Lloyd, L.F. / Blow, D.M. #2: ![]() Title: Sequence of Gene Chob Encoding Cholesterol Oxidase of Brevibacterium Sterolicum: Comparison with Choa of Streptomyces Sp. Sa-Coo Authors: Ohta, T. / Fujishiro, K. / Yamaguchi, K. / Tamura, Y. / Aisaka, K. / Uwajima, T. / Hasegawa, M. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 116.9 KB | Display | ![]() |
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PDB format | ![]() | 88.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 54891.742 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Chemical | ChemComp-FAD / ![]() |
#3: Water | ChemComp-HOH / ![]() |
Compound details | THE STRUCTURE CONTAINS AN FAD COFACTOR IN THE OXIDIZED FORM. THE FLAVIN RING SYSTEM OF THE FAD ...THE STRUCTURE CONTAINS AN FAD COFACTOR IN THE OXIDIZED FORM. THE FLAVIN RING SYSTEM OF THE FAD MOLECULE ADOPTS A SLIGHTLY TWISTED CONFORMATI |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 46.48 % | ||||||||||||||||||||
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Crystal grow![]() | *PLUS Temperature: 18 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.8 Å / Num. obs: 46364 / % possible obs: 97.6 % / Num. measured all: 175309 / Rmerge(I) obs: 0.066 |
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Processing
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Refinement | Resolution: 1.8→10 Å / Rfactor Rwork![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 10 Å / Num. reflection all: 45729 / σ(F): 0 / Rfactor all![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 19.4 Å2 |