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Yorodumi- PDB-2r9l: Polymerase Domain from Mycobacterium tuberculosis Ligase D in com... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2r9l | ||||||
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Title | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | ||||||
Components |
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Keywords | TRANSFERASE/DNA / TRANSFERASE / PROTEIN-DNA COMPLEX / ATP-binding / Ligase / Nucleotide-binding / TRANSFERASE-DNA COMPLEX | ||||||
Function / homology | Function and homology information : / ribonucleotide binding / DNA ligase activity / DNA ligase (ATP) / DNA ligase (ATP) activity / single-stranded DNA 3'-5' DNA exonuclease activity / DNA ligation / DNA primase activity / DNA replication, synthesis of primer / DNA-directed 5'-3' RNA polymerase activity ...: / ribonucleotide binding / DNA ligase activity / DNA ligase (ATP) / DNA ligase (ATP) activity / single-stranded DNA 3'-5' DNA exonuclease activity / DNA ligation / DNA primase activity / DNA replication, synthesis of primer / DNA-directed 5'-3' RNA polymerase activity / double-strand break repair via nonhomologous end joining / double-strand break repair / manganese ion binding / DNA recombination / DNA-directed DNA polymerase activity / nucleotide binding / magnesium ion binding / DNA binding / ATP binding / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | Mycobacterium tuberculosis H37Rv (bacteria) synthetic construct (others) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.4 Å | ||||||
Authors | Brissett, N.C. / Fox, G.C. / Pitcher, R.S. / Doherty, A.J. | ||||||
Citation | Journal: Science / Year: 2007 Title: Structure of a NHEJ polymerase-mediated DNA synaptic complex Authors: Brissett, N.C. / Pitcher, R.S. / Juarez, R. / Picher, A.J. / Green, A.J. / Dafforn, T.R. / Fox, G.C. / Blanco, L. / Doherty, A.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2r9l.cif.gz | 145.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2r9l.ent.gz | 109.6 KB | Display | PDB format |
PDBx/mmJSON format | 2r9l.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/r9/2r9l ftp://data.pdbj.org/pub/pdb/validation_reports/r9/2r9l | HTTPS FTP |
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-Related structure data
Related structure data | 2iruS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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