+Open data
-Basic information
Entry | Database: PDB / ID: 2n3m | ||||||
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Title | G-quadruplex structure of an anti-proliferative DNA sequence | ||||||
Components | DNA_(28-MER) | ||||||
Keywords | DNA / G-quadruplex / AGRO100 / AS1411 | ||||||
Function / homology | DNA / DNA (> 10) Function and homology information | ||||||
Biological species | synthetic (others) | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing | ||||||
Model details | lowest energy, model1 | ||||||
Authors | Do, N.Q. / Chung, W.J. / Truong, T.H.A. / Heddi, B. / Phan, A.T. | ||||||
Citation | Journal: To be Published Title: G-quadruplex structure of an anti-proliferative DNA sequence Authors: Do, N.Q. / Chung, W.J. / Truong, T.H.A. / Heddi, B. / Phan, A.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2n3m.cif.gz | 171.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2n3m.ent.gz | 147 KB | Display | PDB format |
PDBx/mmJSON format | 2n3m.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/n3/2n3m ftp://data.pdbj.org/pub/pdb/validation_reports/n3/2n3m | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 8872.649 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 90 / pH: 7 / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing / Software ordinal: 1 | |||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 / Representative conformer: 1 |