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Yorodumi- PDB-2mft: Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mft | ||||||||||||||||||||
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Title | Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions | ||||||||||||||||||||
Components | 5'-D(*Keywords | DNA / G-Quadruplex | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / DGSA-distance geometry simulated annealing, molecular dynamics | Model details | lowest energy, model1 | Authors | Karsisiotis, A.I. / Webba da Silva, M. | Citation | Journal: To be Published | Title: Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions Authors: Karsisiotis, A.I. / Webba da Silva, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mft.cif.gz | 142.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mft.ent.gz | 120 KB | Display | PDB format |
PDBx/mmJSON format | 2mft.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mf/2mft ftp://data.pdbj.org/pub/pdb/validation_reports/mf/2mft | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 6643.248 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian VNMRS 500 / Manufacturer: Varian / Model: VNMRS 500 / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing, molecular dynamics Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 88 / Conformers submitted total number: 10 |